ViewGene
Locus Name:
GeneID:
Location:

GeneID:386
TrivialName: PA14_37650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37650
PAO1 Ortholog Locus:PA2077
Sequence Length:1905
Protein Length:634
Start: 3351063
Stop: 3352967
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05465.1|AE004635_3 (AE004635) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 632/634 (99%), Positives = 633/634 (99%)
Sequence:
ATGACCCTATCGCGACTCAGCCTTGCCATCCTTTCCGTTCTCGCCGGTGCCCCGGCATTCGCCGACGACAGC
GGCGTCGACCTCGACCAGGGCTGGAACCAGACCCAGAAGACCGCCTGGCTGGAAGCCGGCCAGGGCTCGCGG
ATGCTGCCGCTGGCCTGGCTGGTGGCGCTGGAGCAGCGCGCCAGCGAAGAACCGCTGATGTCCGATGCGCTG
ATCCGCCAGTACGGCTATGTCCCGCACACCCTCGGCGGTTCCAGCGTGAAGGTGGTGCAGGGCTACGCGGTC
GACCGCAGCGACGACAGCGACCTGACCTTCACCAAGCTGCGCTGGAAAGCCCTGCAGGGCTCCAAGGAACCC
TGGGTCGGACCGACCTGCAGCATGTGCCACACCTCGCACATCAGCTACCAGGGCACCCAGTTGACCGTCTAC
GGCGGGCAGACCATGGGCGACCTCGCCGGCTTCCAGCTGGAGATCCTCGGCGCCCTGCAGAGCACCCGCGCC
GACACCGCCAAGTTCGAGCGCTTCGCCCGCAAGGTGCTCGGCGCCGATGGCCTGGTCAGCGGCTACAACGAC
GCCAACAAGGCACGCCTGCAGGCAGCCCTGGACGCCACCATCGTGCGCCTGCGCGACGGCTCGCACTTCAAC
CTGCCGCACGATCCCGAGTTCGGCCCGGGCCGCCTGGACGCCATCGGTTCGATCTTCAACTCGGTGGGCTAC
GAACTGCACGCCGACGAGCAGATCTACGGCGCCGAGGACGCCCCCGTGAGCTATCCGTTCCTGTGGAACGTA
CCGCAGCTGGACCGCGTGCAGTGGACCGGCTTCAACCCGAACCACATCAACGTGGTCGACATCGACAACCGC
AAGTTCGACGTCGGCGCCCTGGCGCGCAACGCCGGCGAGGCGGTCGGGGTATTCGCCGACGTCAAGGTGCTC
AGCCCGATCCAGTCGGCGCTGCACATCGGCTACCCGTCGAGCATCAACGTCGACAACCTGATCCGCATCGAA
GACCAGCTCGGCCAACTGAAGCCGCCGGCCTGGCCGAACCAGCTGTTCGGCGCCCCGGAGCCGACCAGGGTC
GCCGAGGGCCGCGAGCTGTACCGGCAACATTGCTCCAGCTGCCACACGCCGCTGGACCGCAACGACCTGCGG
ACCCCGGTGAAGACCGTGCTCACCCACCTGCAGGCGCGCGGCGAGGTCGCGCCGATCGGTACCGACCCGTGG
ACCGCCTGCAACAGCATCGCCCAGCTGAAGACCGGCTACGTGCGCGGCAAGCCCTACCTGTCCTTCGTCGGC
ACTGGCCAGCGCGGTTTCTACGGCAAGCAGGCCTATGCGGTGGACGTGCTCCAGGAAGTGGTGGTCCAGGCC
CTGGCCGCGCGCGGCCTGAGCGTCGCCCTGGGTGCCTTCCAGACCGCCGCCCTGGGCATCTTCGACGGGCAG
TTGCCGCCGCTGATCAGTCCGGTGCCGGACAGCCCCGACGCCGACAGCGTCGAAGCGACCGCCGCGGACGCG
CCAGGCGCCCTGCTCCTGGCCGAAAACGTCGCGGCCGACAGCGACAAGGCCCGGCGCCTGGAGCAGTGCCTG
GCGATGACCAGCGACCTGATGGCCTACAAGGCGCGCCCACTGAACGGTATCTGGGCCAGCCCGCCCTACCTG
CACAACGGCTCGGTGGCGACCCTCTACGACCTGCTGCTGCCGCCGGACCTGCGGCCGCGCACCTTCTATACC
GGCAGCGTCGAGTTCGACCCGGTCAACGTCGGCTACATCACCGATGCCGGAGGCGCCAACCGCTTCCTCTTC
GACAGCGGCAAGCCGGGCAACGCCAATGGCGGCCACGACTACGGCAACGCGCAGTTCAACGAGCAGCAGCGC
CGCGCCCTGGTCGAGTACATGAAGACCCTCTGA
Translation:
MTLSRLSLAILSVLAGAPAFADDSGVDLDQGWNQTQKTAWLEAGQGSRMLPLAWLVALEQRASEEPLMSDAL
IRQYGYVPHTLGGSSVKVVQGYAVDRSDDSDLTFTKLRWKALQGSKEPWVGPTCSMCHTSHISYQGTQLTVY
GGQTMGDLAGFQLEILGALQSTRADTAKFERFARKVLGADGLVSGYNDANKARLQAALDATIVRLRDGSHFN
LPHDPEFGPGRLDAIGSIFNSVGYELHADEQIYGAEDAPVSYPFLWNVPQLDRVQWTGFNPNHINVVDIDNR
KFDVGALARNAGEAVGVFADVKVLSPIQSALHIGYPSSINVDNLIRIEDQLGQLKPPAWPNQLFGAPEPTRV
AEGRELYRQHCSSCHTPLDRNDLRTPVKTVLTHLQARGEVAPIGTDPWTACNSIAQLKTGYVRGKPYLSFVG
TGQRGFYGKQAYAVDVLQEVVVQALAARGLSVALGAFQTAALGIFDGQLPPLISPVPDSPDADSVEATAADA
PGALLLAENVAADSDKARRLEQCLAMTSDLMAYKARPLNGIWASPPYLHNGSVATLYDLLLPPDLRPRTFYT
GSVEFDPVNVGYITDAGGANRFLFDSGKPGNANGGHDYGNAQFNEQQRRALVEYMKTL*
AnnotationID:395GeneID:386
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2077
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:775




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17917




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:386
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
645
                           PA2077_tr
                           translation of PA2077
                           634
                           99.68
                           99.84
                           0
                           3313.0
     

     
     
29646
                           gb|AAG05465.1|AE004635_3
                           (AE004635) hypothetical protein PA2077 [Pseudomonas aeruginosa PAO1]
                           634
                           99.68
                           99.84
                           0
                           3313.0
     

     
     
646
                           PA2078_tr
                           translation of PA2078
                           655
                           42.74
                           58.47
                           52
                           1224.0
     

     
     
29647
                           gb|AAG05466.1|AE004635_4
                           (AE004635) hypothetical protein PA2078 [Pseudomonas aeruginosa PAO1]
                           655
                           42.74
                           58.47
                           52
                           1224.0
     

     
     
29649
                           emb|CAD18319.1|
                           (AL646083) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           834
                           19.54
                           27.45
                           406
                           354.0
     

     






      

          
GC ORFID: 43388How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2077Glimmer Score: 

          
Start: 1602851Stop: 1600947

          
Length: 1905


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2077 translation of PA2077Homolog Bit Score 1280.0

          
Other Homologs:  t_PA2078 (ORF: BLASTX 459.0), t_PA2077 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTATCGCGACTCAGCCTTGCCATCCTTTCCGTTCTCGCCGGTGCCCCGGCATTCGCCGACGACAGC 
GGCGTCGACCTCGACCAGGGCTGGAACCAGACCCAGAAGACCGCCTGGCTGGAAGCCGGCCAGGGCTCGCGG 
ATGCTGCCGCTGGCCTGGCTGGTGGCGCTGGAGCAGCGCGCCAGCGAAGAACCGCTGATGTCCGATGCGCTG 
ATCCGCCAGTACGGCTATGTCCCGCACACCCTCGGCGGTTCCAGCGTGAAGGTGGTGCAGGGCTACGCGGTC 
GACCGCAGCGACGACAGCGACCTGACCTTCACCAAGCTGCGCTGGAAAGCCCTGCAGGGCTCCAAGGAACCC 
TGGGTCGGACCGACCTGCAGCATGTGCCACACCTCGCACATCAGCTACCAGGGCACCCAGTTGACCGTCTAC 
GGCGGGCAGACCATGGGCGACCTCGCCGGCTTCCAGCTGGAGATCCTCGGCGCCCTGCAGAGCACCCGCGCC 
GACACCGCCAAGTTCGAGCGCTTCGCCCGCAAGGTGCTCGGCGCCGATGGCCTGGTCAGCGGCTACAACGAC 
GCCAACAAGGCACGCCTGCAGGCAGCCCTGGACGCCACCATCGTGCGCCTGCGCGACGGCTCGCACTTCAAC 
CTGCCGCACGATCCCGAGTTCGGCCCGGGCCGCCTGGACGCCATCGGTTCGATCTTCAACTCGGTGGGCTAC 
GAACTGCACGCCGACGAGCAGATCTACGGCGCCGAGGACGCCCCCGTGAGCTATCCGTTCCTGTGGAACGTA 
CCGCAGCTGGACCGCGTGCAGTGGACCGGCTTCAACCCGAACCACATCAACGTGGTCGACATCGACAACCGC 
AAGTTCGACGTCGGCGCCCTGGCGCGCAACGCCGGCGAGGCGGTCGGGGTATTCGCCGACGTCAAGGTGCTC 
AGCCCGATCCAGTCGGCGCTGCACATCGGCTACCCGTCGAGCATCAACGTCGACAACCTGATCCGCATCGAA 
GACCAGCTCGGCCAACTGAAGCCGCCGGCCTGGCCGAACCAGCTGTTCGGCGCCCCGGAGCCGACCAGGGTC 
GCCGAGGGCCGCGAGCTGTACCGGCAACATTGCTCCAGCTGCCACACGCCGCTGGACCGCAACGACCTGCGG 
ACCCCGGTGAAGACCGTGCTCACCCACCTGCAGGCGCGCGGCGAGGTCGCGCCGATCGGTACCGACCCGTGG 
ACCGCCTGCAACAGCATCGCCCAGCTGAAGACCGGCTACGTGCGCGGCAAGCCCTACCTGTCCTTCGTCGGC 
ACTGGCCAGCGCGGTTTCTACGGCAAGCAGGCCTATGCGGTGGACGTGCTCCAGGAAGTGGTGGTCCAGGCC 
CTGGCCGCGCGCGGCCTGAGCGTCGCCCTGGGTGCCTTCCAGACCGCCGCCCTGGGCATCTTCGACGGGCAG 
TTGCCGCCGCTGATCAGTCCGGTGCCGGACAGCCCCGACGCCGACAGCGTCGAAGCGACCGCCGCGGACGCG 
CCAGGCGCCCTGCTCCTGGCCGAAAACGTCGCGGCCGACAGCGACAAGGCCCGGCGCCTGGAGCAGTGCCTG 
GCGATGACCAGCGACCTGATGGCCTACAAGGCGCGCCCACTGAACGGTATCTGGGCCAGCCCGCCCTACCTG 
CACAACGGCTCGGTGGCGACCCTCTACGACCTGCTGCTGCCGCCGGACCTGCGGCCGCGCACCTTCTATACC 
GGCAGCGTCGAGTTCGACCCGGTCAACGTCGGCTACATCACCGATGCCGGAGGCGCCAACCGCTTCCTCTTC 
GACAGCGGCAAGCCGGGCAACGCCAATGGCGGCCACGACTACGGCAACGCGCAGTTCAACGAGCAGCAGCGC 
CGCGCCCTGGTCGAGTACATGAAGACCCTCTGA