ViewGene
Locus Name:
GeneID:
Location:

GeneID:3859
TrivialName: PA14_12850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12850
PAO1 Ortholog Locus:PA3944
Sequence Length:579
Protein Length:192
Start: 1102625
Stop: 1103203
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07331.1|AE004812_6 (AE004812) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 191/192 (99%), Positives = 191/192 (99%)
Sequence:
ATGAACGCGAACCTTCCCCCTTCCGCCATTTCCGAACTGCATGGCCCGCGCCTGCTGCTGCGCGCCTGGCGC
GACAGCGACCGCGAGGCGTTCGCCGAGATGTGCGCCGACCCGCAGGTAATGGAATTCTTCCCCAGTGTGCTC
GACCGCGCGCAGAGCGACGCCTTGGTCGATCGCGTCCAGGCGCATTTTGCCGAGCGTGGCTACGGGCCCTGG
GCCCTGGAGCTACCGGGCGAGGCGGCGTTCATCGGATTCACCGGCCTGTTCGACGTGACCATGGACGTGCAC
TTCGCCCCGACCGTGGAGATCGGCTGGCGCCTGGCGCCCGCCTACTGGGGCCGTGGATTCGCCCGCGAAGCG
GCGGAAACCGCCTTGGACTTCGCCTTCGAGCGGCTGCGCCTGCCCGAGGTGGTGGCCTTCACCACGCCGCCC
AACCGCCGCTCCTGGGGCTTGATGGAGCGCCTGGGCATGCGTCGCGATCCGGCCGAGGATTTCGACCACCCA
CTCCTGGCAGCGGATCACCCGATGCGCCGGCATATCCTCTATCGCGTCGACGCGGCCCGCTGGGCGGAGCGG
TGA
Translation:
MNANLPPSAISELHGPRLLLRAWRDSDREAFAEMCADPQVMEFFPSVLDRAQSDALVDRVQAHFAERGYGPW
ALELPGEAAFIGFTGLFDVTMDVHFAPTVEIGWRLAPAYWGRGFAREAAETALDFAFERLRLPEVVAFTTPP
NRRSWGLMERLGMRRDPAEDFDHPLLAADHPMRRHILYRVDAARWAER*
AnnotationID:3866GeneID:3859
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 11:11:53
Gene Name:
Confidence Code:3
GeneProduct:probable acetyltransferase
Cell Localization:()
Synonyms:PA3944
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1670
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|11381 COG1670, RimL, Acetyltransferases, including
N-acetylases of ribosomal proteins
[Translation, ribosomal structure and biogenesis]
Length = 187
Score = 97.3 bits (241), Expect = 2e-21
Identities = 58/186 (31%), Positives = 80/186 (43%),






   
Genomic Context:






   
Comment:


















    ReferenceID:7721




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24863




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3859
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6086
                           PA3944_tr
                           translation of PA3944
                           192
                           99.47
                           99.47
                           0
                           1022.0
     

     
     
169816
                           gb|AAG07331.1|AE004812_6
                           (AE004812) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           192
                           99.47
                           99.47
                           0
                           1022.0
     

     
     
6087
                           PA3945_tr
                           translation of PA3945
                           197
                           54.82
                           64.46
                           6
                           543.0
     

     
     
169817
                           gb|AAG07332.1|AE004812_7
                           (AE004812) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           197
                           54.82
                           64.46
                           6
                           543.0
     

     
     
169818
                           gb|AAO58107.1|
                           (AE016872) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           195
                           48.71
                           61.53
                           9
                           489.0
     

     






      

          
GC ORFID: 46861How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3944Glimmer Score: 

          
Start: 3851313Stop: 3850735

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3944 translation of PA3944Homolog Bit Score 398.0

          
Other Homologs:  t_PA3945 (ORF: BLASTX 213.0), psyr_15may02_Scaffold4_revised_gene5384 (ORF: BLASTX 194.0), t_PA3944 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCGAACCTTCCCCCTTCCGCCATTTCCGAACTGCATGGCCCGCGCCTGCTGCTGCGCGCCTGGCGC 
GACAGCGACCGCGAGGCGTTCGCCGAGATGTGCGCCGACCCGCAGGTAATGGAATTCTTCCCCAGTGTGCTC 
GACCGCGCGCAGAGCGACGCCTTGGTCGATCGCGTCCAGGCGCATTTTGCCGAGCGTGGCTACGGGCCCTGG 
GCCCTGGAGCTACCGGGCGAGGCGGCGTTCATCGGATTCACCGGCCTGTTCGACGTGACCATGGACGTGCAC 
TTCGCCCCGACCGTGGAGATCGGCTGGCGCCTGGCGCCCGCCTACTGGGGCCGTGGATTCGCCCGCGAAGCG 
GCGGAAACCGCCTTGGACTTCGCCTTCGAGCGGCTGCGCCTGCCCGAGGTGGTGGCCTTCACCACGCCGCCC 
AACCGCCGCTCCTGGGGCTTGATGGAGCGCCTGGGCATGCGTCGCGATCCGGCCGAGGATTTCGACCACCCA 
CTCCTGGCAGCGGATCACCCGATGCGCCGGCATATCCTCTATCGCGTCGACGCGGCCCGCTGGGCGGAGCGG 
TGA