ViewGene
Locus Name:
GeneID:
Location:

GeneID:3858
TrivialName: PA14_14290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14290
PAO1 Ortholog Locus:PA3844
Sequence Length:612
Protein Length:203
Start: 1219367
Stop: 1219978
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07231.1|AE004801_9 (AE004801) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 201/203 (99%), Positives = 203/203 (100%)
Sequence:
ATGCAACTGATCGGTATGCTGGATTCGCCTTTTGTGCGCCGGGTCGCCATCGCCCTGCGCCTGCTGGACCTG
CCCTACGAGCACCGGCCGCTGTCGGTGTTTCGCAATTTCGAGGCGTTCAGCCTGTTCAACCCGATGGTCAAG
GCGCCCACGCTGGTGCTGGACGATGGCACCGTGCTGATGGACTCCAGCCTGATCCTCGATTACCTGGAGTGC
CTGGCCGGCCGCGAACGCAGTCTGCTGCCGCAACGGCCGCAGGCCCGTGCACGGGCGCTGAGTCTGATCGGC
GCGGCGTTGGTGGCCTGCGAGAAATCCGTGCAGATCTACTACGAACTGAACCTGCGTCCCGAGGAACGCCGC
CATGGCCCCTGGCTGGAGCGGGTGGAGGGGCAGTTGCTGGCGGCCTACGACTGGCTGGAGGCAGCGCTGCGC
CAGGAGCCGCTGGCACGCGACGGCGGCATCGACCTGGTCGGGGTGACCGTCGCGGTGGCCTGGCGCTTCAGC
CAACTGGTGGTCGCGGAGCGGGTCGCCGCCAGCGAATACCCGGAACTGGCAAGCTATTCGGATTATGCGGAG
GGGTTGCCGGTGTTCCTCGAGACGCCGCCGGTCTGA
Translation:
MQLIGMLDSPFVRRVAIALRLLDLPYEHRPLSVFRNFEAFSLFNPMVKAPTLVLDDGTVLMDSSLILDYLEC
LAGRERSLLPQRPQARARALSLIGAALVACEKSVQIYYELNLRPEERRHGPWLERVEGQLLAAYDWLEAALR
QEPLARDGGIDLVGVTVAVAWRFSQLVVAERVAASEYPELASYSDYAEGLPVFLETPPV*
AnnotationID:3865GeneID:3858
AnnotatorUID: danlee
Modification Date/Time: 2005-10-19 12:12:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3844
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|70729948|ref|YP_259687.1|  hypothetical protein PFL_2580 [Pseudomonas fluorescens Pf-5]
gi|68344247|gb|AAY91853.1|  conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
     Length=203
     Score =  246 bits (627),  Expect = 4e-64
     Identities = 122/201 (60%), Positives = 152/201 (75%), Gaps = 0/201 (0%)

gi|17427137|emb|CAD13657.1|  CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
gi|17544848|ref|NP_518250.1|  hypothetical protein RSc0129 [Ralstonia solanacearum GMI1000]
     Length=202
     Score =  234 bits (596),  Expect = 2e-60
     Identities = 124/202 (61%), Positives = 153/202 (75%), Gaps = 3/202 (1%)






 
Structural Features:
COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].
             CD-Length = 211 residues,  96.2% aligned
             Score = 85.3 bits (210), Expect = 4e-18






   
Genomic Context:






   
Comment:


















    ReferenceID:7719




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24861




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3858
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6085
                           PA3844_tr
                           translation of PA3844
                           203
                           99.01
                           99.99
                           0
                           1022.0
     

     
     
169813
                           gb|AAG07231.1|AE004801_9
                           (AE004801) hypothetical protein PA3844 [Pseudomonas aeruginosa PAO1]
                           203
                           99.01
                           99.99
                           0
                           1022.0
     

     
     
169814
                           emb|CAD13657.1|
                           (AL646057) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           204
                           60.78
                           75.00
                           3
                           595.0
     

     
     
169815
                           gb|AAQ60726.1|
                           (AE016921) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           212
                           56.13
                           67.92
                           10
                           553.0
     

     






      

          
GC ORFID: 46860How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3844Glimmer Score: 

          
Start: 3734571Stop: 3733960

          
Length: 612


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3844 translation of PA3844Homolog Bit Score 398.0

          
Other Homologs:  t_PA3844 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACTGATCGGTATGCTGGATTCGCCTTTTGTGCGCCGGGTCGCCATCGCCCTGCGCCTGCTGGACCTG 
CCCTACGAGCACCGGCCGCTGTCGGTGTTTCGCAATTTCGAGGCGTTCAGCCTGTTCAACCCGATGGTCAAG 
GCGCCCACGCTGGTGCTGGACGATGGCACCGTGCTGATGGACTCCAGCCTGATCCTCGATTACCTGGAGTGC 
CTGGCCGGCCGCGAACGCAGTCTGCTGCCGCAACGGCCGCAGGCCCGTGCACGGGCGCTGAGTCTGATCGGC 
GCGGCGTTGGTGGCCTGCGAGAAATCCGTGCAGATCTACTACGAACTGAACCTGCGTCCCGAGGAACGCCGC 
CATGGCCCCTGGCTGGAGCGGGTGGAGGGGCAGTTGCTGGCGGCCTACGACTGGCTGGAGGCAGCGCTGCGC 
CAGGAGCCGCTGGCACGCGACGGCGGCATCGACCTGGTCGGGGTGACCGTCGCGGTGGCCTGGCGCTTCAGC 
CAACTGGTGGTCGCGGAGCGGGTCGCCGCCAGCGAATACCCGGAACTGGCAAGCTATTCGGATTATGCGGAG 
GGGTTGCCGGTGTTCCTCGAGACGCCGCCGGTCTGA