ViewGene
Locus Name:
GeneID:
Location:

GeneID:3857
TrivialName: PA14_39200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39200
PAO1 Ortholog Locus:PA1958
Sequence Length:576
Protein Length:191
Start: 3491319
Stop: 3491894
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05346.1|AE004622_8 (AE004622) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 191/191 (100%), Positives = 191/191 (100%)
Sequence:
GTGTCACCCCTTGAACTCTTCGCCGCTTCGCTCGGCGCCATCGCCGTCTACCTGACCGTCCGCCAGAATCCC
TGGTGCTGGCCCATCGGACTGGTGATGGTGGCGCTCTACGCCTGGATATTCTTCGAGGTGAAGCTTTATTCG
GACATGCTCCTGCAAATGGTCTACGCGGCGCTACAGCTCTATGGCTGGTGGCAGTGGACCCGCGGCGGGCAG
GACCACGACGGCCGCTCGGTGAGCCGCCTGAACGCCGCGCAGCGCCTCTACGGGCTCGGTGCGGGCCTGGTC
GGCAGCGTCGCGCTCGGTTACCTGATGGCCAACCACACCGATGCCGCCAGTCCCTGGTGGGACGCCGGATTG
ACCGCCTTCAGCCTGGTGGCGCAATGCTGGATGGCGCAGAAGCGCCTGGAATGCTGGGCCCTGTGGATCGCC
GTGGACGTGCTGTTCGTGGCGCTCTTCGCCAGCAAGGCGCTGTACCTGACCGCCGCCCTCTACGCCCTCTTC
ACCCTGCTGGCGATCCACGGCTGGCGGACCTGGCGCCGCGACCCGGCATTACGCGAGGGCGTCGCCGCATGA
Translation:
MSPLELFAASLGAIAVYLTVRQNPWCWPIGLVMVALYAWIFFEVKLYSDMLLQMVYAALQLYGWWQWTRGGQ
DHDGRSVSRLNAAQRLYGLGAGLVGSVALGYLMANHTDAASPWWDAGLTAFSLVAQCWMAQKRLECWALWIA
VDVLFVALFASKALYLTAALYALFTLLAIHGWRTWRRDPALREGVAA*
AnnotationID:3864GeneID:3857
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:17
Gene Name:
Confidence Code:3
GeneProduct:putative nicotinamide mononucleotide transporter
Cell Localization:()
Synonyms:PA1958
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative nicotinamide mononucleotide transporter
Functional Category Confidence Code:5
COGs:COG3201,pfam04973
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56629.1| (AE016867) nicotinamide mononucleotide transporter PnuC, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 187

 Score =  255 bits (651), Expect = 1e-67
 Identities = 123/185 (66%), Positives = 141/185 (76%)

>gb|AAM39989.1| (AE012166) PnuC protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 191

 Score =  187 bits (475), Expect = 3e-47
 Identities = 93/188 (49%), Positives = 118/188 (62%), Gaps = 4/188 (2%)








 
Structural Features:
COG3201, PnuC, Nicotinamide mononucleotide transporter 
[Coenzyme metabolism]
CD-Length = 222 residues,  87.8% aligned
Score =  175 bits (444), Expect = 4e-45
Identities = 79/195 (40%), Positives = 116/195 (59%), Gaps = 4/195 (2%)

pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. 
CD-Length = 186 residues,  80.6% aligned
Score =  147 bits (372), Expect = 7e-37
Identities = 69/151 (45%), Positives = 88/151 (58%), Gaps = 5/151 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14943




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24859




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32763




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3857_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3857
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6084
                           PA1958_tr
                           translation of PA1958
                           191
                           99.99
                           99.99
                           0
                           1023.0
     

     
     
169807
                           gb|AAG05346.1|AE004622_8
                           (AE004622) probable transporter [Pseudomonas aeruginosa PAO1]
                           191
                           99.47
                           99.99
                           0
                           1020.0
     

     
     
169808
                           gb|AAO56629.1|
                           (AE016867) nicotinamide mononucleotide transporter PnuC, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           191
                           63.87
                           73.82
                           4
                           646.0
     

     
     
169809
                           gb|AAN68468.1|AE016479_8
                           (AE016784) nicotinamide mononucleotide transporter, putative [Pseudomonas putida KT2440]
                           191
                           60.20
                           71.20
                           3
                           621.0
     

     
     
169810
                           gb|AAM39989.1|
                           (AE012166) PnuC protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           199
                           48.24
                           61.80
                           16
                           477.0
     

     






      

          
GC ORFID: 46859How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1958Glimmer Score: 

          
Start: 1462592Stop: 1462017

          
Length: 576


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1958 translation of PA1958Homolog Bit Score 398.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7230 (ORF: BLASTX 257.0), t_PA1958 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCACCCCTTGAACTCTTCGCCGCTTCGCTCGGCGCCATCGCCGTCTACCTGACCGTCCGCCAGAATCCC 
TGGTGCTGGCCCATCGGACTGGTGATGGTGGCGCTCTACGCCTGGATATTCTTCGAGGTGAAGCTTTATTCG 
GACATGCTCCTGCAAATGGTCTACGCGGCGCTACAGCTCTATGGCTGGTGGCAGTGGACCCGCGGCGGGCAG 
GACCACGACGGCCGCTCGGTGAGCCGCCTGAACGCCGCGCAGCGCCTCTACGGGCTCGGTGCGGGCCTGGTC 
GGCAGCGTCGCGCTCGGTTACCTGATGGCCAACCACACCGATGCCGCCAGTCCCTGGTGGGACGCCGGATTG 
ACCGCCTTCAGCCTGGTGGCGCAATGCTGGATGGCGCAGAAGCGCCTGGAATGCTGGGCCCTGTGGATCGCC 
GTGGACGTGCTGTTCGTGGCGCTCTTCGCCAGCAAGGCGCTGTACCTGACCGCCGCCCTCTACGCCCTCTTC 
ACCCTGCTGGCGATCCACGGCTGGCGGACCTGGCGCCGCGACCCGGCATTACGCGAGGGCGTCGCCGCATGA