ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3856

TrivialName: PA14_66910

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_66910

PAO1 Ortholog Locus: PA5064

Sequence Length: 627

Protein Length: 208

Start: 5974838

Stop: 5975464

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08449.1|AE004919_10 (AE004919) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 205/208 (98%), Positives = 206/208 (99%)

Sequence:

ATGAGCTCGCTGCTGATCCAGGCCGTGCTGGCCGCCGCCGAAACCGGCATCAATCGCGTCCTGCGCCTCGAC
GGGACAGCGCTGCCGCGCCTGCGCAGGCTTTCCACCAAGGTCATCGAGGTCGACTGCCTGAGCCCGCCGCTG
CGGGTCTTCATCCTGCCCGCCGGCGACGGCCTGCACTTCGCCGCGCAGCATGAGGCGGAGGTCGACTGCACC
TTGCGTGCGCCGGCCGGCAACCTCCTGCACCTGGCCCTGGCGCGCGACAAGACCCGCGTCCTGCACAGCCCG
GAAGTCAGCATGGACGGCGACAGCGCGGCCCTGCTGGAACTGGCCGGCATCCTGCAGAGCCTGGAGCTGGAC
TGGGAGTACGAACTGTCGCGCTGGCTCGGCCCGCTCGCCACCCAGGTGCTCGGCAGCGGCCTGCGCGACGCT
TCGCGCTGGAGCGCGCAGAGCCTGCACAGCCTGCGCCTGAACCTGGCCGACTACCTTGCCGAGGAAAGCCGC
ACGCTGGTCGGCCAGCACGAAGCCGAAGCCCGCTTCGCCGAACTGGACCAGCTGAAGCTGGCCCTCGATCGT
CTCGACGCGCGCGTCGGACGCCTCAGCCAAAAGACCAAGCCCGACGCATGA

Translation:

MSSLLIQAVLAAAETGINRVLRLDGTALPRLRRLSTKVIEVDCLSPPLRVFILPAGDGLHFAAQHEAEVDCT
LRAPAGNLLHLALARDKTRVLHSPEVSMDGDSAALLELAGILQSLELDWEYELSRWLGPLATQVLGSGLRDA
SRWSAQSLHSLRLNLADYLAEESRTLVGQHEAEARFAELDQLKLALDRLDARVGRLSQKTKPDA*

AnnotationID:3863 GeneID:3856

AnnotatorUID: diggins

Modification Date/Time: 2005-03-14 19:07:13

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA5064

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:7715

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24857

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34940

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3856_cdd.html

URL:

Homologs By Global Alignment

Gene ID:3856

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6083 PA5064_tr translation of PA5064 208 98.55 99.03 0 1024.0

169804 gb|AAG08449.1|AE004919_10 (AE004919) hypothetical protein PA5064 [Pseudomonas aeruginosa PAO1] 208 98.55 99.03 0 1024.0

169805 gb|AAO58577.1| (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 210 60.47 75.71 5 642.0

169806 gb|AAN70578.1|AE016700_6 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 210 58.57 72.85 5 606.0

GC ORFID: `46858`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5064`	Glimmer Score:
Start: `5238522`	Stop: `5239148`
Length: `627`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5064 translation of PA5064`	Homolog Bit Score `399.0`
Other Homologs: `psyr_15may02_Scaffold2_revised_gene3795 (ORF: BLASTX 255.0), t_PA5064 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCTCGCTGCTGATCCAGGCCGTGCTGGCCGCCGCCGAAACCGGCATCAATCGCGTCCTGCGCCTCGAC GGGACAGCGCTGCCGCGCCTGCGCAGGCTTTCCACCAAGGTCATCGAGGTCGACTGCCTGAGCCCGCCGCTG CGGGTCTTCATCCTGCCCGCCGGCGACGGCCTGCACTTCGCCGCGCAGCATGAGGCGGAGGTCGACTGCACC TTGCGTGCGCCGGCCGGCAACCTCCTGCACCTGGCCCTGGCGCGCGACAAGACCCGCGTCCTGCACAGCCCG GAAGTCAGCATGGACGGCGACAGCGCGGCCCTGCTGGAACTGGCCGGCATCCTGCAGAGCCTGGAGCTGGAC TGGGAGTACGAACTGTCGCGCTGGCTCGGCCCGCTCGCCACCCAGGTGCTCGGCAGCGGCCTGCGCGACGCT TCGCGCTGGAGCGCGCAGAGCCTGCACAGCCTGCGCCTGAACCTGGCCGACTACCTTGCCGAGGAAAGCCGC ACGCTGGTCGGCCAGCACGAAGCCGAAGCCCGCTTCGCCGAACTGGACCAGCTGAAGCTGGCCCTCGATCGT CTCGACGCGCGCGTCGGACGCCTCAGCCAAAAGACCAAGCCCGACGCATGA