ViewGene
Locus Name:
GeneID:
Location:

GeneID:3854
TrivialName: PA14_28010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28010
PAO1 Ortholog Locus:PA2792
Sequence Length:597
Protein Length:198
Start: 2424932
Stop: 2425528
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06180.1|AE004706_10 (AE004706) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 194/198 (97%), Positives = 196/198 (98%)
Sequence:
ATGAACGTCTATCGCAAGGTTTCCCGCAGTGCCGTGACTTGGCTGTGCTCCGCGCTGCTGGCCGCATCCGGC
CATGCCTGGGCCGAAGACTGGTGGGTGGTACACAAGGGCGACGACCCTGCCGAGCTTGACGTGTTCCTGGCC
GATGCCGATTCGCTGGCACCGGTGCCGGGTATCGAAAACGCCTGGCAGGTGCAGATCGCCATGCTGTTCGAC
TCCTTCCATCTGCTCAGCGCGCACCAGTACCGCTGCGATAAGCGAGAGGTGAAGGTGGTCAACGCCAAGACC
TTCTCCAACAACGGGCAACCCACGAACCTCCAGTTCACCTTCGCCAAGGGCTGGACCCCGCTGCCCAACGAA
AGCCATGAGGCTGTCCTCCAGTTCATCTGCGCGCCGCAGCAACGCGAACGCAACGGCATGCGCTCCACCGGC
AGGGGCGTGCCATTGCAGGCGGTGATCACCGCCGTCGGCATGGTCGAGATGGAGCGCGCCCAGGCCAATCTC
GCCGAGGCCCGGCGCAAGCTCGAAGAGGCCAAGAGCGATCGCGTCATGGGCGAGCTCGATCGTCTGCTCGGC
AACGAGCCCCGGAAGCCCTGA
Translation:
MNVYRKVSRSAVTWLCSALLAASGHAWAEDWWVVHKGDDPAELDVFLADADSLAPVPGIENAWQVQIAMLFD
SFHLLSAHQYRCDKREVKVVNAKTFSNNGQPTNLQFTFAKGWTPLPNESHEAVLQFICAPQQRERNGMRSTG
RGVPLQAVITAVGMVEMERAQANLAEARRKLEEAKSDRVMGELDRLLGNEPRKP*
AnnotationID:3861GeneID:3854
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 03:03:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2792
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7711




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24853




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3854
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6081
                           PA2792_tr
                           translation of PA2792
                           198
                           97.97
                           98.98
                           0
                           1025.0
     

     
     
169752
                           gb|AAG06180.1|AE004706_10
                           (AE004706) hypothetical protein PA2792 [Pseudomonas aeruginosa PAO1]
                           198
                           97.97
                           98.98
                           0
                           1025.0
     

     






      

          
GC ORFID: 46856How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2792Glimmer Score: 

          
Start: 2528994Stop: 2528398

          
Length: 597


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2792 translation of PA2792Homolog Bit Score 399.0

          
Other Homologs:  t_PA2792 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGTCTATCGCAAGGTTTCCCGCAGTGCCGTGACTTGGCTGTGCTCCGCGCTGCTGGCCGCATCCGGC 
CATGCCTGGGCCGAAGACTGGTGGGTGGTACACAAGGGCGACGACCCTGCCGAGCTTGACGTGTTCCTGGCC 
GATGCCGATTCGCTGGCACCGGTGCCGGGTATCGAAAACGCCTGGCAGGTGCAGATCGCCATGCTGTTCGAC 
TCCTTCCATCTGCTCAGCGCGCACCAGTACCGCTGCGATAAGCGAGAGGTGAAGGTGGTCAACGCCAAGACC 
TTCTCCAACAACGGGCAACCCACGAACCTCCAGTTCACCTTCGCCAAGGGCTGGACCCCGCTGCCCAACGAA 
AGCCATGAGGCTGTCCTCCAGTTCATCTGCGCGCCGCAGCAACGCGAACGCAACGGCATGCGCTCCACCGGC 
AGGGGCGTGCCATTGCAGGCGGTGATCACCGCCGTCGGCATGGTCGAGATGGAGCGCGCCCAGGCCAATCTC 
GCCGAGGCCCGGCGCAAGCTCGAAGAGGCCAAGAGCGATCGCGTCATGGGCGAGCTCGATCGTCTGCTCGGC 
AACGAGCCCCGGAAGCCCTGA