ViewGene
Locus Name:
GeneID:
Location:

GeneID:3853
TrivialName: PA14_30140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30140
PAO1 Ortholog Locus:PA2627
Sequence Length:621
Protein Length:206
Start: 2610799
Stop: 2610179
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06015.1|AE004691_6 (AE004691) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 206/206 (100%), Positives = 206/206 (100%)
Sequence:
GTGAGCGATCCGCGACAGCAACTGATTGCCCTCGGCGCCGTCTTCGAATCCGCAGCCCTGGTCGACAAGCTG
GCACGCACCGGGCAGATCAGCGAAGCCCCGCTGGGCTGCATGCTCGGCAGCCTGCTGGCGCGCAACCCGGCC
AGCACCCTGGACGTCTACGGTGGCGACAGCCTCAACCTGCGCGACGGCTTCAAGGCCCTGGCCAGCGCCCTG
GAGCGCAAGCCCGGCAGCCTGCAGCGCGAACCGCTGCGCTACGCCCTGGCGATGCTGACCCTGGAACGGCAA
CTGGACAAGCGCGGCGACATGCTCGACCTGATCGGCCAGCGCCTCGACCAGGTCGAACAGCAGGTCCAGCAC
TTCGGCCTGGTCCATGAGAACGTCATCGCCTCGTTCGCCAGCATCTACCAGGACACCCTCAGCACCTTCCGC
CAGCGCATCCAGGTACACGGCGACATGCGGCACCTGCAGGTCAGCAGCAACGCCGCGCGGATCCGCGCCCTG
CTGCTCGCCGGCATCCGCTCGGCGCGGCTCTGGCGGCAACTGGGCGGCAGCCGCTGGCAGATGGTGTTCAGC
CGGCGCCGGCTGCTCAACGAACTCTATCCCCTGCTGCGCGGCTAG
Translation:
MSDPRQQLIALGAVFESAALVDKLARTGQISEAPLGCMLGSLLARNPASTLDVYGGDSLNLRDGFKALASAL
ERKPGSLQREPLRYALAMLTLERQLDKRGDMLDLIGQRLDQVEQQVQHFGLVHENVIASFASIYQDTLSTFR
QRIQVHGDMRHLQVSSNAARIRALLLAGIRSARLWRQLGGSRWQMVFSRRRLLNELYPLLRG*
AnnotationID:3860GeneID:3853
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 13:01:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2627
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14941




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24851




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33194




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3853_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3853
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6080
                           PA2627_tr
                           translation of PA2627
                           206
                           99.99
                           99.99
                           0
                           1026.0
     

     
     
169740
                           gb|AAG06015.1|AE004691_6
                           (AE004691) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           206
                           99.51
                           99.99
                           0
                           1023.0
     

     
     
169741
                           gb|AAN69609.1|AE016594_6
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           208
                           71.15
                           85.57
                           2
                           774.0
     

     
     
169742
                           gb|AAO56837.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           206
                           66.99
                           85.43
                           0
                           734.0
     

     
     
169744
                           emb|CAC90459.1|
                           (AJ414149) conserved hypothetical protein [Yersinia pestis CO92]
                           208
                           39.42
                           55.76
                           2
                           352.0
     

     






      

          
GC ORFID: 46855How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2627Glimmer Score: 

          
Start: 2343127Stop: 2343747

          
Length: 621


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2627 translation of PA2627Homolog Bit Score 399.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2757 (ORF: BLASTX 288.0), t_PA2627 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGATCCGCGACAGCAACTGATTGCCCTCGGCGCCGTCTTCGAATCCGCAGCCCTGGTCGACAAGCTG 
GCACGCACCGGGCAGATCAGCGAAGCCCCGCTGGGCTGCATGCTCGGCAGCCTGCTGGCGCGCAACCCGGCC 
AGCACCCTGGACGTCTACGGTGGCGACAGCCTCAACCTGCGCGACGGCTTCAAGGCCCTGGCCAGCGCCCTG 
GAGCGCAAGCCCGGCAGCCTGCAGCGCGAACCGCTGCGCTACGCCCTGGCGATGCTGACCCTGGAACGGCAA 
CTGGACAAGCGCGGCGACATGCTCGACCTGATCGGCCAGCGCCTCGACCAGGTCGAACAGCAGGTCCAGCAC 
TTCGGCCTGGTCCATGAGAACGTCATCGCCTCGTTCGCCAGCATCTACCAGGACACCCTCAGCACCTTCCGC 
CAGCGCATCCAGGTACACGGCGACATGCGGCACCTGCAGGTCAGCAGCAACGCCGCGCGGATCCGCGCCCTG 
CTGCTCGCCGGCATCCGCTCGGCGCGGCTCTGGCGGCAACTGGGCGGCAGCCGCTGGCAGATGGTGTTCAGC 
CGGCGCCGGCTGCTCAACGAACTCTATCCCCTGCTGCGCGGCTAG