ViewGene
Locus Name:
GeneID:
Location:

GeneID:3852
TrivialName: PA14_32500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32500
PAO1 Ortholog Locus:PA2484
Sequence Length:615
Protein Length:204
Start: 2824030
Stop: 2824644
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05872.1|AE004676_4 (AE004676) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 203/204 (99%), Positives = 203/204 (99%)
Sequence:
ATGGCCAAGCGTGGACGCCCCTGCGGCTTCGATCGTGAACAGGCATTGCGCCGGGCGCTCGACGTGTTCTGG
GAGGCCGGTTACGAAGGCGCGACCATGGCCGCGCTGAAGGAGGCCATGGGTGGCATCTGCGCGCCGAGCATG
TATGCCGCCTATGGTTCCAAGGAGGCGCTGTTCCGTTCGGCGGTGGAACTCTACCTGAGCCAGGAGTGCCAG
CTTTCCAAGGGCGCCTTCGCCCTGCCGACGGCGCGCGAGTCGATCGCCGCGCTGCTGGAAAGCGCCGCCGTC
AGCTACACCACGGAAGGCAAGCCGCGCGGTTGCCTGGTCGACCTCAGCACGACCAATTTCTCGCCGGCCAAC
AAAGGCGTCGAAGACTACCTGCGCGATCACCGGCGGCGCGCCGCGCGCCTGCTGCGCGAGCGTTTCGCACGA
GGCGTGGCTGACGGCGACGTGCCGGCCGGAGCCGATCTCGACGCGCTCACCAGTTTCTACAGCAGCGTGCTC
CAGGGCCTGTCGATCCAGGCCCGCGACGGCGCCAGCCGCCAGCAGTTGCTGGCCATCGGCCGCTGCGCGATG
GCGGCCTGGGATTCCCTGCTGGCGGTCGAGGCCGCCTGA
Translation:
MAKRGRPCGFDREQALRRALDVFWEAGYEGATMAALKEAMGGICAPSMYAAYGSKEALFRSAVELYLSQECQ
LSKGAFALPTARESIAALLESAAVSYTTEGKPRGCLVDLSTTNFSPANKGVEDYLRDHRRRAARLLRERFAR
GVADGDVPAGADLDALTSFYSSVLQGLSIQARDGASRQQLLAIGRCAMAAWDSLLAVEAA*
AnnotationID:3859GeneID:3852
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:38
Gene Name:
Confidence Code:3
GeneProduct:putative TetR-family transcriptional regulator
Cell Localization:()
Synonyms:PA2484
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE43112.1| (BX640419) putative TetR-family transcriptional regulator
           [Bordetella pertussis]
          Length = 206

 Score =  180 bits (456), Expect = 5e-45
 Identities = 100/205 (48%), Positives = 132/205 (64%), Gaps = 2/205 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7707




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24849




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33028




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3852_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3852
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6078
                           PA2484_tr
                           translation of PA2484
                           204
                           99.50
                           99.50
                           0
                           1025.0
     

     
     
169726
                           gb|AAG05872.1|AE004676_4
                           (AE004676) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           204
                           99.50
                           99.50
                           0
                           1025.0
     

     
     
169727
                           emb|CAE43112.1|
                           (BX640419) putative TetR-family transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           207
                           48.30
                           63.76
                           4
                           460.0
     

     
     
169728
                           emb|CAE34515.1|
                           (BX640449) putative TetR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           207
                           47.34
                           62.80
                           4
                           449.0
     

     
     
169729
                           emb|CAE38988.1|
                           (BX640434) putative TetR-family transcriptional regulator [Bordetella parapertussis]
                           207
                           47.34
                           62.80
                           4
                           449.0
     

     






      

          
GC ORFID: 46854How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2484Glimmer Score: 

          
Start: 2129894Stop: 2129280

          
Length: 615


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2484 translation of PA2484Homolog Bit Score 399.0

          
Other Homologs:  t_PA2931 (ORF: BLASTX 175.0), t_PA2484 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAGCGTGGACGCCCCTGCGGCTTCGATCGTGAACAGGCATTGCGCCGGGCGCTCGACGTGTTCTGG 
GAGGCCGGTTACGAAGGCGCGACCATGGCCGCGCTGAAGGAGGCCATGGGTGGCATCTGCGCGCCGAGCATG 
TATGCCGCCTATGGTTCCAAGGAGGCGCTGTTCCGTTCGGCGGTGGAACTCTACCTGAGCCAGGAGTGCCAG 
CTTTCCAAGGGCGCCTTCGCCCTGCCGACGGCGCGCGAGTCGATCGCCGCGCTGCTGGAAAGCGCCGCCGTC 
AGCTACACCACGGAAGGCAAGCCGCGCGGTTGCCTGGTCGACCTCAGCACGACCAATTTCTCGCCGGCCAAC 
AAAGGCGTCGAAGACTACCTGCGCGATCACCGGCGGCGCGCCGCGCGCCTGCTGCGCGAGCGTTTCGCACGA 
GGCGTGGCTGACGGCGACGTGCCGGCCGGAGCCGATCTCGACGCGCTCACCAGTTTCTACAGCAGCGTGCTC 
CAGGGCCTGTCGATCCAGGCCCGCGACGGCGCCAGCCGCCAGCAGTTGCTGGCCATCGGCCGCTGCGCGATG 
GCGGCCTGGGATTCCCTGCTGGCGGTCGAGGCCGCCTGA