ViewGene
Locus Name:
GeneID:
Location:

GeneID:3849
TrivialName: PA14_53300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53300
PAO1 Ortholog Locus:PA0848
Sequence Length:600
Protein Length:199
Start: 4724457
Stop: 4723858
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04237.1|AE004519_8 (AE004519) probable alkyl hydroperoxide reductase [Pseudomonas aeruginosa PAO1]
Identities = 199/199 (100%), Positives = 199/199 (100%)
Sequence:
ATGAGCGTACTGGTCAACAAGCAAGCCCCCGACTTCACTGCTGCCGCGGTCCTCGGCGACGGTTCCATCGTC
GATGCCTTCCAGCTTTCCAGCCTGCGCGGCAAGTACGTCGTGCTGTTCTTCTGGCCGCTCGACTTCACTTTC
GTCTGCCCCTCGGAAATCATCGCCCACAACAACCGCATGGATAAGTTCCGCGAGCTGGGCGTCGAGGTGGTC
GGTGTCTCCATCGACTCGCAGTTCACCCATCACGCCTGGCGCAGCACGCCGGTGGAGAAGGGCGGCATCGGC
GCGGTCGAGTTCACCATGGTCGCCGACGTCAAGCACGAGATCACCCGCGCCTACGGTATCGAGCACGAAGAC
GGCGTGGCCCTGCGTGCCTCCTTCCTGATCGACCGCGCCGGGGTGGTCCAGCACCAGGTGGTGAACAACCTG
CCGCTGGGGCGCGAGGTGGACGAGATGGTGCGCCTGGTCGAGGCCCTGCAGTTCACCGAGGAACACGGCGAG
GTCTGCCCGGCCGGTTGGCGCAAGGGCCAGAAAGGCATGAAGGCGAGCGCCGAGGGCGTGGCCTCGTACCTG
GCCGAGAACGCCGAGGCACTGTGA
Translation:
MSVLVNKQAPDFTAAAVLGDGSIVDAFQLSSLRGKYVVLFFWPLDFTFVCPSEIIAHNNRMDKFRELGVEVV
GVSIDSQFTHHAWRSTPVEKGGIGAVEFTMVADVKHEITRAYGIEHEDGVALRASFLIDRAGVVQHQVVNNL
PLGREVDEMVRLVEALQFTEEHGEVCPAGWRKGQKGMKASAEGVASYLAENAEAL*
AnnotationID:3856GeneID:3849
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 17:05:35
Gene Name:
Confidence Code:3
GeneProduct:probable alkyl hydroperoxide reductase
Cell Localization:()
Synonyms:PA0848
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0450, KOG0852
Secondary Functional Category(ies):Adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0450, AhpC, Peroxiredoxin. Score: 263, 2e-71
KOG0852, Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes. Score: 224, 1e-59






   
Genomic Context:






   
Comment:


















    ReferenceID:7701




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24843




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3849
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6074
                           PA0848_tr
                           translation of PA0848
                           199
                           99.99
                           99.99
                           0
                           1024.0
     

     
     
169626
                           gb|AAG04237.1|AE004519_8
                           (AE004519) probable alkyl hydroperoxide reductase [Pseudomonas aeruginosa PAO1]
                           199
                           99.99
                           99.99
                           0
                           1024.0
     

     
     
169627
                           gb|AAQ61401.1|
                           (AE016923) probable peroxidase [Chromobacterium violaceum ATCC 12472]
                           204
                           68.13
                           83.33
                           5
                           727.0
     

     
     
169631
                           emb|CAD08858.1|
                           (AL627266) probable peroxidase [Salmonella enterica subsp. enterica serovar Typhi]
                           201
                           67.16
                           80.59
                           3
                           712.0
     

     
     
169630
                           gb|AAO70051.1|
                           (AE016842) probable peroxidase [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           201
                           67.16
                           80.59
                           3
                           712.0
     

     






      

          
GC ORFID: 46851How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0848Glimmer Score: 

          
Start: 229450Stop: 230049

          
Length: 600


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0848 translation of PA0848Homolog Bit Score 399.0

          
Other Homologs:  t_PA3529 (ORF: BLASTX 277.0), t_PA0848 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGTACTGGTCAACAAGCAAGCCCCCGACTTCACTGCTGCCGCGGTCCTCGGCGACGGTTCCATCGTC 
GATGCCTTCCAGCTTTCCAGCCTGCGCGGCAAGTACGTCGTGCTGTTCTTCTGGCCGCTCGACTTCACTTTC 
GTCTGCCCCTCGGAAATCATCGCCCACAACAACCGCATGGATAAGTTCCGCGAGCTGGGCGTCGAGGTGGTC 
GGTGTCTCCATCGACTCGCAGTTCACCCATCACGCCTGGCGCAGCACGCCGGTGGAGAAGGGCGGCATCGGC 
GCGGTCGAGTTCACCATGGTCGCCGACGTCAAGCACGAGATCACCCGCGCCTACGGTATCGAGCACGAAGAC 
GGCGTGGCCCTGCGTGCCTCCTTCCTGATCGACCGCGCCGGGGTGGTCCAGCACCAGGTGGTGAACAACCTG 
CCGCTGGGGCGCGAGGTGGACGAGATGGTGCGCCTGGTCGAGGCCCTGCAGTTCACCGAGGAACACGGCGAG 
GTCTGCCCGGCCGGTTGGCGCAAGGGCCAGAAAGGCATGAAGGCGAGCGCCGAGGGCGTGGCCTCGTACCTG 
GCCGAGAACGCCGAGGCACTGTGA