ViewGene

Locus Name:
GeneID:
Location:

GeneID:3848
TrivialName: PA14_02530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02530
PAO1 Ortholog Locus:PA0201
Sequence Length:582
Protein Length:193
Start: 226691
Stop: 227272
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03590.1|AE004458_5 (AE004458) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 193/193 (100%), Positives = 193/193 (100%)
Sequence:
ATGCACAGCGAACGCGTCCGTTATGTGTTGGTGCCCGGTTGGTACGGCTCGGAAGACGCCCATTGGCAAAGT
CACTGGCAGCGCGCGCTGCCCAATGCCTCACGGGTCGAGCAACAGGACTGGATCACCCCGCTGCGCGCCGAC
TGGATCGCCGAGCTGGACGCCGAGATCCGCCGCCAGCCCGGGCCGGTGGTGCTGATCGCGCACAGCCTGGGT
TGTGTGACAGTGGCGCTGTGGGCGGCCCAGGCCGAGCGCCGGGTGCGCGACCAGGTACGCGGCGCCCTGCTG
GTGGCGCCGGCCGACGTCGAGCGCGAGAGCTGCGCCGAGGCGCTGCGCAACTTCGCGCCGATCAGCCGCGAG
CCGTTGCCGTTCCCCAGCGTGCTGGTGGGTTCCGACAACGACCAGGCCTGCAGCCCGCAGCGCGCCATGCAC
CTGGCCCGCGCCTGGGGCGCGGAGACGGTGATCCTGCCCGAGGCCGGGCACATCAACGTGAAGTCCGGCCAC
GGCGCCTGGGAGGCCGGCTACCGTCACCTGTTCCGCTTGCAGTACCTGATCGACAGCCAGGCCCGTCGCCGC
GCCTGA
Translation:
MHSERVRYVLVPGWYGSEDAHWQSHWQRALPNASRVEQQDWITPLRADWIAELDAEIRRQPGPVVLIAHSLG
CVTVALWAAQAERRVRDQVRGALLVAPADVERESCAEALRNFAPISREPLPFPSVLVGSDNDQACSPQRAMH
LARAWGAETVILPEAGHINVKSGHGAWEAGYRHLFRLQYLIDSQARRRA*
AnnotationID:3855GeneID:3848
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:08
Gene Name:
Confidence Code:3
GeneProduct:putative esterase
Cell Localization:()
Synonyms:PA0201
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3545
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold
CD-Length = 181 residues, 100.0% aligned
Score =  216 bits (552), Expect = 1e-57
Identities = 96/185 (51%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Genomic Context:
Comment:
ReferenceID:7699
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24841
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33571
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3848_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3848

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6073 PA0201_tr translation of PA0201 193 99.99 99.99 0 1028.0
169608 gb|AAG03590.1|AE004458_5 (AE004458) hypothetical protein PA0201 [Pseudomonas aeruginosa PAO1] 193 99.99 99.99 0 1028.0
169609 gb|AAN70732.1|AE016716_11 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 193 63.21 76.16 0 660.0
169610 gb|AAO58644.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 193 61.13 73.57 0 639.0
169615 gb|AAQ58056.1| (AE016911) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 202 45.54 55.94 15 408.0
GC ORFID: 46850How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0201Glimmer Score:
Start: 6028032Stop: 6028613
Length: 582
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0201 translation of PA0201Homolog Bit Score 400.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3236 (ORF: BLASTX 250.0), t_PA0201 (ORF: GLIMMER)
GC ORF Sequence
ATGCACAGCGAACGCGTCCGTTATGTGTTGGTGCCCGGTTGGTACGGCTCGGAAGACGCCCATTGGCAAAGT
CACTGGCAGCGCGCGCTGCCCAATGCCTCACGGGTCGAGCAACAGGACTGGATCACCCCGCTGCGCGCCGAC
TGGATCGCCGAGCTGGACGCCGAGATCCGCCGCCAGCCCGGGCCGGTGGTGCTGATCGCGCACAGCCTGGGT
TGTGTGACAGTGGCGCTGTGGGCGGCCCAGGCCGAGCGCCGGGTGCGCGACCAGGTACGCGGCGCCCTGCTG
GTGGCGCCGGCCGACGTCGAGCGCGAGAGCTGCGCCGAGGCGCTGCGCAACTTCGCGCCGATCAGCCGCGAG
CCGTTGCCGTTCCCCAGCGTGCTGGTGGGTTCCGACAACGACCAGGCCTGCAGCCCGCAGCGCGCCATGCAC
CTGGCCCGCGCCTGGGGCGCGGAGACGGTGATCCTGCCCGAGGCCGGGCACATCAACGTGAAGTCCGGCCAC
GGCGCCTGGGAGGCCGGCTACCGTCACCTGTTCCGCTTGCAGTACCTGATCGACAGCCAGGCCCGTCGCCGC
GCCTGA