ViewGene
Locus Name:
GeneID:
Location:

GeneID:3846
TrivialName: PA14_68560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68560
PAO1 Ortholog Locus:PA5190
Sequence Length:603
Protein Length:200
Start: 6116013
Stop: 6115411
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08575.1|AE004932_2 (AE004932) probable nitroreductase [Pseudomonas aeruginosa PAO1]
Identities = 199/200 (99%), Positives = 199/200 (99%)
Sequence:
ATGCATATCGAAGACGCCGTTCGTAGTCGCCGTGCCATCAAGGGCTACGACTCATCCTTCAGCCTGACTCGC
GAAGAGAAGGACCATCTCCTGGACCTGGCGCTGCATGCGCCTTCCGCCTTCAACCTGCAACACGTGCGGCTG
GTCGAGGTCAGCGATCCGCAATTGCGCACGCAGTTGCGTGAAGTGGCCTGGGACCAGGCGCAGGTCACCGAC
GCGGCGATGCTGGTGGTGGTGTGCGCCCAGCTCGACAGTTGGGAGCGCAACGCGCAGCGGGTCTGGGACGGT
GCTCCCGAGGCGGTACAGGCGTTCATGGCAGGCGCCATCGACACCTACTACCGCGGCAAGCCCCAGGTACAG
CGCGACGAAGCCATGCGCAGCTGCGGCCTGCTGGCGCAGACCCTGATGCTGGTCGCCCGCGGCCAGGGCCTG
GATTCGTGTCCGATGGATGGTTTCGACTTCGATGCCGTGGCCCGGCTGATCAACCTGCCGGACAACCATGTG
ATCGGCCTGATGGTGGCGGTCGGGAAAAAGGCCGTTGAACCCTGGCCGCGCAGTGGCAAGCTGCCGCGGGAA
GAACTGGTCATCCGCGACCGCTTCTGA
Translation:
MHIEDAVRSRRAIKGYDSSFSLTREEKDHLLDLALHAPSAFNLQHVRLVEVSDPQLRTQLREVAWDQAQVTD
AAMLVVVCAQLDSWERNAQRVWDGAPEAVQAFMAGAIDTYYRGKPQVQRDEAMRSCGLLAQTLMLVARGQGL
DSCPMDGFDFDAVARLINLPDNHVIGLMVAVGKKAVEPWPRSGKLPREELVIRDRF*
AnnotationID:3853GeneID:3846
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 17:05:12
Gene Name:
Confidence Code:3
GeneProduct:putative nitroreductase
Cell Localization:()
Synonyms:drgA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative drgA gene product
Functional Category Confidence Code:5
COGs:COG0778,pfam00881
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAA17909.1| (D90910) DrgA gene product [Synechocystis sp. PCC 6803]
          Length = 201

 Score =  191 bits (484), Expect = 3e-48
 Identities = 91/196 (46%), Positives = 132/196 (67%)

>emb|CAD79186.1| (BX294153) drgA protein [Pirellula sp.]
          Length = 201

 Score =  182 bits (462), Expect = 1e-45
 Identities = 87/201 (43%), Positives = 134/201 (66%), Gaps = 1/201 (0%)






 
Structural Features:
COG0778, NfnB, Nitroreductase [Energy production and conversion]
CD-Length = 207 residues,  99.0% aligned
Score =  113 bits (282), Expect = 2e-26
Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 11/208 (5%)

pfam00881, Nitroreductase, Nitroreductase family. Members of this family 
utilise FMN as a cofactor.
CD-Length = 176 residues, 100.0% aligned
Score =  109 bits (274), Expect = 2e-25
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 11/179 (6%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7695




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24837




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34906




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3846_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3846
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6071
                           PA5190_tr
                           translation of PA5190
                           200
                           99.50
                           99.50
                           0
                           1029.0
     

     
     
169473
                           gb|AAG08575.1|AE004932_2
                           (AE004932) probable nitroreductase [Pseudomonas aeruginosa PAO1]
                           200
                           99.50
                           99.50
                           0
                           1029.0
     

     
     
169474
                           dbj|BAA17909.1|
                           (D90910) DrgA gene product [Synechocystis sp. PCC 6803]
                           201
                           45.77
                           66.16
                           1
                           484.0
     

     
     
169475
                           emb|CAD79186.1|
                           (BX294153) drgA protein [Pirellula sp.] [Pirellula sp. 1]
                           201
                           43.28
                           66.66
                           1
                           464.0
     

     
     
169476
                           gb|AAA91952.1|
                           (L29426) drgA gene product [Synechocystis sp.]
                           210
                           41.90
                           62.38
                           10
                           439.0
     

     






      

          
GC ORFID: 46848How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5190Glimmer Score: 

          
Start: 5379699Stop: 5379097

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5190 translation of PA5190Homolog Bit Score 400.0

          
Other Homologs:  t_PA5190 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATATCGAAGACGCCGTTCGTAGTCGCCGTGCCATCAAGGGCTACGACTCATCCTTCAGCCTGACTCGC 
GAAGAGAAGGACCATCTCCTGGACCTGGCGCTGCATGCGCCTTCCGCCTTCAACCTGCAACACGTGCGGCTG 
GTCGAGGTCAGCGATCCGCAATTGCGCACGCAGTTGCGTGAAGTGGCCTGGGACCAGGCGCAGGTCACCGAC 
GCGGCGATGCTGGTGGTGGTGTGCGCCCAGCTCGACAGTTGGGAGCGCAACGCGCAGCGGGTCTGGGACGGT 
GCTCCCGAGGCGGTACAGGCGTTCATGGCAGGCGCCATCGACACCTACTACCGCGGCAAGCCCCAGGTACAG 
CGCGACGAAGCCATGCGCAGCTGCGGCCTGCTGGCGCAGACCCTGATGCTGGTCGCCCGCGGCCAGGGCCTG 
GATTCGTGTCCGATGGATGGTTTCGACTTCGATGCCGTGGCCCGGCTGATCAACCTGCCGGACAACCATGTG 
ATCGGCCTGATGGTGGCGGTCGGGAAAAAGGCCGTTGAACCCTGGCCGCGCAGTGGCAAGCTGCCGCGGGAA 
GAACTGGTCATCCGCGACCGCTTCTGA