ViewGene

Locus Name:
GeneID:
Location:

GeneID:3843
TrivialName: PA14_36410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36410
PAO1 Ortholog Locus:PA2178
Sequence Length:609
Protein Length:202
Start: 3243223
Stop: 3243831
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05566.1|AE004644_13 (AE004644) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 198/202 (98%), Positives = 200/202 (99%)
Sequence:
ATGACCCGCGAAATGGCTCGGCTACTGATCAGTCCCACCAATGCCTGGCCTCGTCTGCGCCAGGACTACGAC
CATCACCCTTTCGCCTTCCTCGTTCCGCTGTTGCTGTTGCCGCTGCTGCCGGCGGCCTGCCTGTTCATCGGC
ACGACGCAGGTCGGCTGGTCGCTGCCGGGCAACGACAGCGTGCAACACCTCTCCAGCGGCAGCGCCCTGCTG
CTGGCGACGATGTGTTACCTGGGCTTCGTCGCCGGCGTGGTGATCATGGGCTTCTTCGTACGCTGGGTGCTG
TTCCGCACGCCGTCGCGTCCCAGCGTACCGGGCAGCCTGACCTTCACCACGGCGATCGCCGTGCCCTTGATG
CTCGCCGGGATCGTCGCCCTGGTGCCCTGGCGGGTCCTCCTGCTGCTGGCCGCGGCGGCTGCCTGCGCCTAC
TCGGTACGCCTGCTGTTCACCGGCCTGCCGCTGTTCATGCGCATGCAGGAGCGGCAGACATTGTTCTACGCC
TTCTGCATCCTCGGCGTCGGCTTCCTGACCCTGCTGACCACCGCCTTCATCTTCATCGAGTTCTGGGGGCAA
AGCCTGGCCGGCAGCGGCGAGTACCTGCGCTGA
Translation:
MTREMARLLISPTNAWPRLRQDYDHHPFAFLVPLLLLPLLPAACLFIGTTQVGWSLPGNDSVQHLSSGSALL
LATMCYLGFVAGVVIMGFFVRWVLFRTPSRPSVPGSLTFTTAIAVPLMLAGIVALVPWRVLLLLAAAAACAY
SVRLLFTGLPLFMRMQERQTLFYAFCILGVGFLTLLTTAFIFIEFWGQSLAGSGEYLR*
AnnotationID:3850GeneID:3843
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:23
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2178
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7689
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24831
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3843

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6068 PA2178_tr translation of PA2178 202 98.01 99.00 0 1027.0
169307 gb|AAG05566.1|AE004644_13 (AE004644) hypothetical protein PA2178 [Pseudomonas aeruginosa PAO1] 202 98.01 99.00 0 1027.0
GC ORFID: 46845How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2178Glimmer Score:
Start: 1710692Stop: 1710084
Length: 609
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2178 translation of PA2178Homolog Bit Score 400.0
Other Homologs: t_PA2178 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCGCGAAATGGCTCGGCTACTGATCAGTCCCACCAATGCCTGGCCTCGTCTGCGCCAGGACTACGAC
CATCACCCTTTCGCCTTCCTCGTTCCGCTGTTGCTGTTGCCGCTGCTGCCGGCGGCCTGCCTGTTCATCGGC
ACGACGCAGGTCGGCTGGTCGCTGCCGGGCAACGACAGCGTGCAACACCTCTCCAGCGGCAGCGCCCTGCTG
CTGGCGACGATGTGTTACCTGGGCTTCGTCGCCGGCGTGGTGATCATGGGCTTCTTCGTACGCTGGGTGCTG
TTCCGCACGCCGTCGCGTCCCAGCGTACCGGGCAGCCTGACCTTCACCACGGCGATCGCCGTGCCCTTGATG
CTCGCCGGGATCGTCGCCCTGGTGCCCTGGCGGGTCCTCCTGCTGCTGGCCGCGGCGGCTGCCTGCGCCTAC
TCGGTACGCCTGCTGTTCACCGGCCTGCCGCTGTTCATGCGCATGCAGGAGCGGCAGACATTGTTCTACGCC
TTCTGCATCCTCGGCGTCGGCTTCCTGACCCTGCTGACCACCGCCTTCATCTTCATCGAGTTCTGGGGGCAA
AGCCTGGCCGGCAGCGGCGAGTACCTGCGCTGA