ViewGene
Locus Name:
GeneID:
Location:

GeneID:3842
TrivialName: PA14_46360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46360
PAO1 Ortholog Locus:PA1397
Sequence Length:633
Protein Length:210
Start: 4125304
Stop: 4124672
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04786.1|AE004569_4 (AE004569) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 209/210 (99%), Positives = 209/210 (99%)
Sequence:
ATGACTGGCCGCATCATCGTCGCCGATGATCATCCGCTGTTTCGCGAGGGCATGCTGAGTATCCTCCAGCGC
CTGCTGCCCGAGGCCAGGATCGAGGAGGCCGGCGATCTCGCCGGGGTCCTGCGCCTGGCTGGCGAAGGCGAG
CAGCCCGATTCGCTGATCCTCGACCTGCGTTTCCCCGGCCTGACCCGCATCGAGATGCTCGCCGACTTGCGC
CGCCGGTTCCCGCGCACCACCCTGATCGTCGTCTCGATGGTCGACGACCCGCAGCTCATCGGCGAAGTGATG
AATGCAGGGGCCGACGGCTTCCTCGGCAAGAGCATCGCGCCCGAGGAACTCGGCCAGGCGATTCTGGCCATC
CGCGCCGGGGAAGTGCTGGTGCGCTACGAACCCTCCGGTCTCCTGCCGCTGCAGCCCAGCCCGCGCCTGGAG
GGGCTCACCGAGCGCCAGCTGGATGTCCTGCGCCTGCTGGCCCAGGGCAAGAGCAACAAGGAGATCGGCCGC
GCCCTGGACATCTCCCACTACACGGTGCGCATCCATGTGTCGTCGCTGCTGCGGGCGCTGGACGTGCCGTCG
CGGACCGCGGCGGCGGTGAAGTATCGGGCGCTGCTGGGGCAGGGGGATGCGGAGTAG
Translation:
MTGRIIVADDHPLFREGMLSILQRLLPEARIEEAGDLAGVLRLAGEGEQPDSLILDLRFPGLTRIEMLADLR
RRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELGQAILAIRAGEVLVRYEPSGLLPLQPSPRLE
GLTERQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVKYRALLGQGDAE*
AnnotationID:3849GeneID:3842
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 21:09:56
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative DNA-binding response regulator, LuxR family
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP31397.1| (AF029714) hypothetical two-components response regulator protein
           [Pseudomonas putida]
          Length = 217

 Score =  239 bits (610), Expect = 8e-63
 Identities = 131/201 (65%), Positives = 158/201 (78%), Gaps = 1/201 (0%)

>gb|AAO54431.1| (AE016859) DNA-binding response regulator, LuxR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 207

 Score =  220 bits (560), Expect = 5e-57
 Identities = 117/204 (57%), Positives = 157/204 (76%), Gaps = 1/204 (0%)

>emb|CAC45124.1| (AL591784) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium
           meliloti]
          Length = 215

 Score =  134 bits (338), Expect = 3e-31
 Identities = 83/207 (40%), Positives = 112/207 (54%), Gaps = 11/207 (5%)






 
Structural Features:
COG2197, CitB, Response regulator containing a CheY-like receiver domain 
and an HTH DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  96.2% aligned
Score =  161 bits (408), Expect = 6e-41
Identities = 81/204 (39%), Positives = 120/204 (58%), Gaps = 7/204 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7687




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24829




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37434




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3842_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3842
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6066
                           PA1397_tr
                           translation of PA1397
                           210
                           99.52
                           99.52
                           0
                           1027.0
     

     
     
169302
                           gb|AAG04786.1|AE004569_4
                           (AE004569) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           210
                           99.52
                           99.52
                           0
                           1027.0
     

     
     
169303
                           gb|AAP31397.1|
                           (AF029714) hypothetical two-components response regulator protein [Pseudomonas putida]
                           224
                           58.48
                           70.53
                           21
                           609.0
     

     
     
169304
                           gb|AAO54431.1|
                           (AE016859) DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000]
                           211
                           55.45
                           74.88
                           5
                           558.0
     

     
     
6067
                           PA2376_tr
                           translation of PA2376
                           221
                           45.24
                           61.53
                           19
                           459.0
     

     






      

          
GC ORFID: 46844How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1397Glimmer Score: 

          
Start: 828605Stop: 829237

          
Length: 633


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1397 translation of PA1397Homolog Bit Score 400.0

          
Other Homologs:  t_PA2376 (ORF: BLASTX 184.0), t_PA1397 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGGCCGCATCATCGTCGCCGATGATCATCCGCTGTTTCGCGAGGGCATGCTGAGTATCCTCCAGCGC 
CTGCTGCCCGAGGCCAGGATCGAGGAGGCCGGCGATCTCGCCGGGGTCCTGCGCCTGGCTGGCGAAGGCGAG 
CAGCCCGATTCGCTGATCCTCGACCTGCGTTTCCCCGGCCTGACCCGCATCGAGATGCTCGCCGACTTGCGC 
CGCCGGTTCCCGCGCACCACCCTGATCGTCGTCTCGATGGTCGACGACCCGCAGCTCATCGGCGAAGTGATG 
AATGCAGGGGCCGACGGCTTCCTCGGCAAGAGCATCGCGCCCGAGGAACTCGGCCAGGCGATTCTGGCCATC 
CGCGCCGGGGAAGTGCTGGTGCGCTACGAACCCTCCGGTCTCCTGCCGCTGCAGCCCAGCCCGCGCCTGGAG 
GGGCTCACCGAGCGCCAGCTGGATGTCCTGCGCCTGCTGGCCCAGGGCAAGAGCAACAAGGAGATCGGCCGC 
GCCCTGGACATCTCCCACTACACGGTGCGCATCCATGTGTCGTCGCTGCTGCGGGCGCTGGACGTGCCGTCG 
CGGACCGCGGCGGCGGTGAAGTATCGGGCGCTGCTGGGGCAGGGGGATGCGGAGTAG