ViewGene

Locus Name:
GeneID:
Location:

GeneID:3840
TrivialName: PA14_67930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67930
PAO1 Ortholog Locus:PA5143
Sequence Length:594
Protein Length:197
Start: 6063843
Stop: 6063250
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08528.1|AE004927_6 (AE004927) imidazoleglycerol-phosphate dehydratase [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGGCCGAACGCAAGGCATCCGTCGCGCGCGACACCCTGGAGACCCAGATCAAGGTCTCCATCGACCTGGAT
GGGACCGGCAAGGCCCGGTTCGATACCGGGGTTCCCTTCCTCGACCACATGATGGACCAGATCGCCCGCCAC
GGCCTGATCGACCTGGACATCGAGTGCAAGGGCGACCTGCATATCGACGATCACCACACCGTCGAGGACATC
GGCATCACCCTCGGCCAGGCCTTCGCCAAGGCCATCGGCGACAAGAAGGGCATCCGCCGCTACGGCCACGCC
TACGTGCCCCTCGATGAGGCGCTGTCGCGGGTGGTCATCGACTTCTCCGGGCGGCCCGGCCTGCAGATGCAC
GTTCCCTTTACCCGTGCCAGCGTCGGCGGCTTCGACGTCGACCTGTTCATGGAATTCTTCCAGGGCTTCGTC
AACCACGCCCAGGTGACCCTGCACATCGACAACCTGCGCGGGCACAACACCCACCACCAGATCGAGACCGTG
TTCAAGGCCTTCGGCCGCGCGCTGCGCATGGCTATCGAGCTGGACGAGCGGATGGCCGGGCAGATGCCGTCG
ACCAAAGGGTGCCTGTGA
Translation:
MAERKASVARDTLETQIKVSIDLDGTGKARFDTGVPFLDHMMDQIARHGLIDLDIECKGDLHIDDHHTVEDI
GITLGQAFAKAIGDKKGIRRYGHAYVPLDEALSRVVIDFSGRPGLQMHVPFTRASVGGFDVDLFMEFFQGFV
NHAQVTLHIDNLRGHNTHHQIETVFKAFGRALRMAIELDERMAGQMPSTKGCL*
AnnotationID:3847GeneID:3840
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 13:01:25
Gene Name:hisB
Confidence Code:2
GeneProduct:imidazoleglycerol-phosphate dehydratase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:4.2.1.19
Status:ACTIVE
Pathway:
Homology:
Structural Features:
>gb|AAN65920.1|AE016220_2 (AE016775) imidazoleglycerol-phosphate dehydratase [Pseudomonas
           putida KT2440]
          Length = 210

 Score =  368 bits (945), Expect = e-101
 Identities = 178/197 (90%), Positives = 187/197 (94%)

>gb|AAO58764.1| (AE016875) imidazoleglycerol-phosphate dehydratase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 197

 Score =  364 bits (935), Expect = e-100
 Identities = 177/197 (89%), Positives = 188/197 (95%)

>dbj|BAC65272.1| (AB091436) imidazoleglycerol-phosphate dehydratase [Burkholderia
           multivorans]
          Length = 195

 Score =  324 bits (830), Expect = 2e-88
 Identities = 155/194 (79%), Positives = 172/194 (88%)

Genomic Context:
Comment:
ReferenceID:7683
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24825
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34945
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3840_cdd.html
URL:
ReferenceID:35782
Author/Investigator(s): Chiariotti L, Nappo AG, Carlomagno MS, Bruni CB.
Title: Gene structure in the histidine operon of Escherichia coli. Identification and nucleotide sequence of the hisB gene.
PubMed: 3007936
MedLine:
Source:
Mol Gen Genet. 1986 Jan;202(1):42-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3007936
ReferenceID:35783
Author/Investigator(s): Limauro D, Avitabile A, Cappellano C, Puglia AM, Bruni CB.
Title: Cloning and characterization of the histidine biosynthetic gene cluster of Streptomyces coelicolor A3(2).
PubMed: 2199329
MedLine:
Source:
Gene. 1990 May 31;90(1):31-41.

Erratum in:
    * Gene. 1991 May 15;101(1):161-2.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2199329
Homologs By Global Alignment
Gene ID:3840

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6064 PA5143_tr translation of PA5143 197 99.99 99.99 0 1031.0
169132 gb|AAG08528.1|AE004927_6 (AE004927) imidazoleglycerol-phosphate dehydratase [Pseudomonas aeruginosa PAO1] 197 99.99 99.99 0 1031.0
169134 gb|AAO58764.1| (AE016875) imidazoleglycerol-phosphate dehydratase [Pseudomonas syringae pv. tomato str. DC3000] 197 89.84 95.43 0 935.0
169133 gb|AAN65920.1|AE016220_2 (AE016775) imidazoleglycerol-phosphate dehydratase [Pseudomonas putida KT2440] 210 84.76 89.04 13 945.0
169136 gb|AAQ58290.1| (AE016912) imidazoleglycerol-phosphate dehydratase [Chromobacterium violaceum ATCC 12472] 199 79.39 85.92 4 824.0
GC ORFID: 46842How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5143Glimmer Score:
Start: 5327528Stop: 5326935
Length: 594
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5143 translation of PA5143Homolog Bit Score 401.0
Other Homologs: t_PA5143 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCGAACGCAAGGCATCCGTCGCGCGCGACACCCTGGAGACCCAGATCAAGGTCTCCATCGACCTGGAT
GGGACCGGCAAGGCCCGGTTCGATACCGGGGTTCCCTTCCTCGACCACATGATGGACCAGATCGCCCGCCAC
GGCCTGATCGACCTGGACATCGAGTGCAAGGGCGACCTGCATATCGACGATCACCACACCGTCGAGGACATC
GGCATCACCCTCGGCCAGGCCTTCGCCAAGGCCATCGGCGACAAGAAGGGCATCCGCCGCTACGGCCACGCC
TACGTGCCCCTCGATGAGGCGCTGTCGCGGGTGGTCATCGACTTCTCCGGGCGGCCCGGCCTGCAGATGCAC
GTTCCCTTTACCCGTGCCAGCGTCGGCGGCTTCGACGTCGACCTGTTCATGGAATTCTTCCAGGGCTTCGTC
AACCACGCCCAGGTGACCCTGCACATCGACAACCTGCGCGGGCACAACACCCACCACCAGATCGAGACCGTG
TTCAAGGCCTTCGGCCGCGCGCTGCGCATGGCTATCGAGCTGGACGAGCGGATGGCCGGGCAGATGCCGTCG
ACCAAAGGGTGCCTGTGA