ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3839

TrivialName: PA14_49200

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_49200

PAO1 Ortholog Locus: PA1178

Sequence Length: 603

Protein Length: 200

Start: 4372007

Stop: 4371405

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04567.1|AE004548_1 (AE004548) PhoP/Q and low Mg2+ inducible outer membrane protein H1 precursor [Pseudomonas aeruginosa PAO1] Identities = 200/200 (100%), Positives = 200/200 (100%)

Sequence:

ATGAAAGCACTCAAGACTCTCTTCATCGCCACCGCCCTGCTGGGTTCCGCCGCCGGCGTCCAGGCCGCCGAC
AACTTCGTCGGCCTGACCTGGGGCGAGACCAGCAACAACATCCAGAAATCCAAGTCGCTGAACCGCAACCTG
AACAGCCCGAACCTCGACAAGGTGATCGACAACACCGGCACCTGGGGCATCCGCGCCGGCCAGCAGTTCGAG
CAGGGCCGCTACTACGCGACCTACGAGAACATCTCCGACACCAGCAGCGGCAACAAGCTGCGCCAGCAGAAC
CTGCTCGGCAGCTACGACGCCTTCCTGCCGATCGGCGACAACAACACCAAGCTGTTCGGCGGTGCCACCCTC
GGCCTGGTCAAGCTGGAACAGGACGGCAAGGGCTTCAAGCGCGACAGCGATGTCGGCTACGCTGCCGGGCTG
CAGGCCGGTATCCTGCAGGAGCTGAGCAAGAATGCCTCGATCGAAGGCGGCTATCGTTACCTGCGCACCAAC
GCCAGCACCGAGATGACCCCGCATGGCGGCAACAAGCTGGGCTCCCTGGACCTGCACAGCAGCTCGCAATTC
TACCTGGGCGCCAACTACAAGTTCTAA

Translation:

MKALKTLFIATALLGSAAGVQAADNFVGLTWGETSNNIQKSKSLNRNLNSPNLDKVIDNTGTWGIRAGQQFE
QGRYYATYENISDTSSGNKLRQQNLLGSYDAFLPIGDNNTKLFGGATLGLVKLEQDGKGFKRDSDVGYAAGL
QAGILQELSKNASIEGGYRYLRTNASTEMTPHGGNKLGSLDLHSSSQFYLGANYKF*

AnnotationID:3846 GeneID:3839

AnnotatorUID: danlee

Modification Date/Time: 2004-02-04 14:02:38

Gene Name: oprH

Confidence Code: 1

GeneProduct: PhoP/Q and low Mg2+ inducible outer membrane prote

Cell Localization: (6) Outer membrane protein

Synonyms:

Cell Localization Confidence Code: 1

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3637

Secondary Functional Category(ies): Adaptation, protection

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:7681

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24823

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3839

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6063 PA1178_tr translation of PA1178 200 99.99 99.99 0 1031.0

169129 gb|AAG04567.1|AE004548_1 (AE004548) PhoP/Q and low Mg2+ inducible outer membrane protein H1 precursor [Pseudomonas aeruginosa PAO1] 200 99.99 99.99 0 1031.0

169130 gb|AAA25911.1| (M26954) outer membrane protein H1 [Pseudomonas aeruginosa] 200 99.99 99.99 0 1031.0

169131 gb|AAN66809.1|AE016310_1 (AE016778) outer membrane protein H1 [Pseudomonas putida KT2440] 204 56.37 71.07 7 557.0

GC ORFID: `46841`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1178`	Glimmer Score:
Start: `581901`	Stop: `582503`
Length: `603`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA1178 translation of PA1178`	Homolog Bit Score `401.0`
Other Homologs: `t_PA1178 (ORF: GLIMMER)`
GC ORF Sequence
ATGAAAGCACTCAAGACTCTCTTCATCGCCACCGCCCTGCTGGGTTCCGCCGCCGGCGTCCAGGCCGCCGAC AACTTCGTCGGCCTGACCTGGGGCGAGACCAGCAACAACATCCAGAAATCCAAGTCGCTGAACCGCAACCTG AACAGCCCGAACCTCGACAAGGTGATCGACAACACCGGCACCTGGGGCATCCGCGCCGGCCAGCAGTTCGAG CAGGGCCGCTACTACGCGACCTACGAGAACATCTCCGACACCAGCAGCGGCAACAAGCTGCGCCAGCAGAAC CTGCTCGGCAGCTACGACGCCTTCCTGCCGATCGGCGACAACAACACCAAGCTGTTCGGCGGTGCCACCCTC GGCCTGGTCAAGCTGGAACAGGACGGCAAGGGCTTCAAGCGCGACAGCGATGTCGGCTACGCTGCCGGGCTG CAGGCCGGTATCCTGCAGGAGCTGAGCAAGAATGCCTCGATCGAAGGCGGCTATCGTTACCTGCGCACCAAC GCCAGCACCGAGATGACCCCGCATGGCGGCAACAAGCTGGGCTCCCTGGACCTGCACAGCAGCTCGCAATTC TACCTGGGCGCCAACTACAAGTTCTAA