ViewGene
Locus Name:
GeneID:
Location:

GeneID:3838
TrivialName: PA14_72460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72460
PAO1 Ortholog Locus:PA5490
Sequence Length:606
Protein Length:201
Start: 6455261
Stop: 6454656
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08875.1|AE004961_10 (AE004961) cytochrome c4 precursor [Pseudomonas aeruginosa PAO1]
Identities = 201/201 (100%), Positives = 201/201 (100%)
Sequence:
ATGAACAAACTTCTCGTGAGTCTGCTGTTGACCCTGGGTCTGACCGGCCTTGCCCATGCCGCTGGCGATGCC
GCCGCGGGCCAGGCGAAAGCCGCGGTATGCGGCGCCTGTCACGGTGCGGATGGCAACAGCCCGGCGCCGAAC
TTCCCGAAACTGGCCGGCCAGGGCGAGCGTTACCTGCTCAAGCAGATGCATGACATCAAGGACGGCAAGCGT
ACCGTGCTGGAAATGACCGGGCTGCTGACCAACCTCAGCGACCAGGACCTGGCCGACATCGCCGCCTACTTC
GCCAGCCAGAAGATGAGCGTCGGCATGGCCGATCCGAACCTGGTGGCCCAGGGCGAAGCGCTGTTCCGCGGC
GGCAAGATCGCTGAAGGCATGCCGGCCTGCACCGGTTGCCATTCCCCGAGCGGCGTCGGCATCGCAACCGCC
GGTTTCCCGCACCTGGGCGGCCAGCACGCGACCTACGTGGCCAAGCAGCTGACCGACTTCCGCGAAGGCACC
CGCACCAACGACGGCGACACCAAGATCATGCAGTCCATCGCCGCCAAGCTGTCGAACAAGGACATCGCCGCG
ATTTCCAGCTACATCCAGGGTCTGCACTGA
Translation:
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKAAVCGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGKR
TVLEMTGLLTNLSDQDLADIAAYFASQKMSVGMADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATA
GFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH*
AnnotationID:3845GeneID:3838
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 07:07:10
Gene Name:cc4
Confidence Code:2
GeneProduct:cytochrome c4 precursor
Cell Localization:()
Synonyms:cycA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2863
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO13004.1| (AY171618) probable cytochrome C4 precursor [Pseudomonas
           fluorescens]
          Length = 203

 Score =  338 bits (866), Expect = 1e-92
 Identities = 168/203 (82%), Positives = 183/203 (90%), Gaps = 2/203 (0%)

>gb|AAA87314.1| (L37290) cytochrome c4 [Azotobacter vinelandii]
          Length = 210

 Score =  320 bits (821), Expect = 2e-87
 Identities = 162/210 (77%), Positives = 173/210 (82%), Gaps = 9/210 (4%)

>gb|AAA20247.1| (U05988) cytochrome c4 preprotein [Pseudomonas stutzeri]
          Length = 210

 Score =  320 bits (819), Expect = 4e-87






 
Structural Features:
COG2863, COG2863, Cytochrome c553 [Energy production and conversion]
CD-Length = 121 residues, 100.0% aligned
Score =  127 bits (321), Expect = 7e-31
Identities = 66/121 (54%), Positives = 82/121 (67%), Gaps = 1/121 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7679




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24821




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33242




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3838_cdd.html


    		




 
URL:

















    ReferenceID:35604




  
Author/Investigator(s):
        Christensen HE.





  
Title:
        Cloning and characterisation of the gene encoding cytochrome c4 from Pseudomonas stutzeri.




  
PubMed:
        8026750


MedLine:
        




    
Source:
Gene. 1994 Jun 24;144(1):139-40.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8026750

















    ReferenceID:35605




  
Author/Investigator(s):
        Price NJ, Vijgenboom E, Ribeiro G, Costa JV, Canters GW, Santos H.





  
Title:
        Cloning and sequence analysis of the gene encoding Methylophilus methylotrophus cytochrome c", a unique protein with a perpendicular orientation of the histidinyl ligands.




  
PubMed:
        10524262


MedLine:
        




    
Source:
Biochim Biophys Acta. 1999 Sep 1;1413(1):55-61.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10524262

















    ReferenceID:35606




  
Author/Investigator(s):
        Keightley JA, Sanders D, Todaro TR, Pastuszyn A, Fee JA.





  
Title:
        Cloning and expression in Escherichia coli of the cytochrome c552 gene from Thermus thermophilus HB8. Evidence for genetic linkage to an ATP-binding cassette protein and initial characterization of the cycA gene products.




  
PubMed:
        9575141


MedLine:
        




    
Source:
J Biol Chem. 1998 May 15;273(20):12006-16.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9575141

















    ReferenceID:35607




  
Author/Investigator(s):
        Ng TC, Laheri AN, Maier RJ.





  
Title:
        Cloning, sequencing, and mutagenesis of the cytochrome c4 gene from Azotobacter vinelandii: characterization of the mutant strain and a proposed new branch in the respiratory chain.




  
PubMed:
        7619830


MedLine:
        




    
Source:
Biochim Biophys Acta. 1995 Jun 30;1230(3):119-29.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7619830

















    ReferenceID:35608




  
Author/Investigator(s):
        Self SJ, Hunter CN, Leatherbarrow RJ.





  
Title:
        Molecular cloning, sequencing and expression of cytochrome c2 from Rhodospirillum rubrum.




  
PubMed:
        2154194


MedLine:
        




    
Source:
Biochem J. 1990 Jan 15;265(2):599-604.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2154194

















    ReferenceID:35609




  
Author/Investigator(s):
        Donohue TJ, McEwan AG, Kaplan S.





  
Title:
        Cloning, DNA sequence, and expression of the Rhodobacter sphaeroides cytochrome c2 gene.




  
PubMed:
        3023293


MedLine:
        




    
Source:
J Bacteriol. 1986 Nov;168(2):962-72.

Erratum in:
    * J Bacteriol 1987 May;169(5):2326.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3023293









           
Homologs By Global Alignment 

           

       



     
Gene ID:3838
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6062
                           PA5490_tr
                           translation of PA5490
                           201
                           99.99
                           99.99
                           0
                           1034.0
     

     
     
169114
                           gb|AAG08875.1|AE004961_10
                           (AE004961) cytochrome c4 precursor [Pseudomonas aeruginosa PAO1]
                           201
                           99.99
                           99.99
                           0
                           1034.0
     

     
     
169115
                           gb|AAO13004.1|
                           (AY171618) probable cytochrome C4 precursor [Pseudomonas fluorescens]
                           203
                           82.75
                           90.14
                           2
                           868.0
     

     
     
169116
                           gb|AAA87314.1|
                           (L37290) cytochrome c4 [Azotobacter vinelandii]
                           210
                           77.14
                           82.38
                           9
                           827.0
     

     
     
169117
                           gb|AAA20247.1|
                           (U05988) cytochrome c4 preprotein [Pseudomonas stutzeri]
                           210
                           76.19
                           82.38
                           9
                           825.0
     

     






      

          
GC ORFID: 46840How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5490Glimmer Score: 

          
Start: 5718950Stop: 5718345

          
Length: 606


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5490 translation of PA5490Homolog Bit Score 402.0

          
Other Homologs:  t_PA5490 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAACTTCTCGTGAGTCTGCTGTTGACCCTGGGTCTGACCGGCCTTGCCCATGCCGCTGGCGATGCC 
GCCGCGGGCCAGGCGAAAGCCGCGGTATGCGGCGCCTGTCACGGTGCGGATGGCAACAGCCCGGCGCCGAAC 
TTCCCGAAACTGGCCGGCCAGGGCGAGCGTTACCTGCTCAAGCAGATGCATGACATCAAGGACGGCAAGCGT 
ACCGTGCTGGAAATGACCGGGCTGCTGACCAACCTCAGCGACCAGGACCTGGCCGACATCGCCGCCTACTTC 
GCCAGCCAGAAGATGAGCGTCGGCATGGCCGATCCGAACCTGGTGGCCCAGGGCGAAGCGCTGTTCCGCGGC 
GGCAAGATCGCTGAAGGCATGCCGGCCTGCACCGGTTGCCATTCCCCGAGCGGCGTCGGCATCGCAACCGCC 
GGTTTCCCGCACCTGGGCGGCCAGCACGCGACCTACGTGGCCAAGCAGCTGACCGACTTCCGCGAAGGCACC 
CGCACCAACGACGGCGACACCAAGATCATGCAGTCCATCGCCGCCAAGCTGTCGAACAAGGACATCGCCGCG 
ATTTCCAGCTACATCCAGGGTCTGCACTGA