ViewGene

Locus Name:
GeneID:
Location:

GeneID:3837
TrivialName: PA14_69250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69250
PAO1 Ortholog Locus:PA5244
Sequence Length:591
Protein Length:196
Start: 6178084
Stop: 6178674
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08629.1|AE004937_1 (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 196/196 (100%), Positives = 196/196 (100%)
Sequence:
ATGATGCTCCAACAATTCCTGCAGGACTTCGGCTATTTCGCCCTTTTTCTCGGTACTTTCTTCGAGGGCGAA
ACCATTCTCGTGCTGGCCGGGTTCCTTGCCTTCCGCGGCTACATGCAGCTGGATACCGTGATTCTCACCGCC
TTCCTCGGCAGCTACGCCGGTGACCAACTCTGGTACTTCCTCGGACGCCGCCACGGCCGCCGGTTGCTGGCG
CGCAAGCCGCGCTGGCAGAAGCTCGGCGACAAGGCGCTGGACCATGTGCGCCGCCATCCTGACCTGTGGGTG
CTGAGTTTCCGCTTCGTCTACGGCCTGCGTACGGTGATGCCGGTGGCCATCGGCCTGTCCGGCTATCCACCG
GCCCGCTATCTTCTTCTCAACGGCATCGGCGCCATCGTCTGGGCCGCCGCGCTGGGCTCCGCCGCCTACTAT
TTCGGCAGCGTACTGGAAGGCATGCTCGGCAACATCAAGAAATACGAACTCATGGTCCTCGGCGGCCTGATC
GTGCTGGGCCTGCTGCTCTGGCTATGGCGGCGTTTCAAGACACCGCGCGGCAACGGCGCGGGCGGCAACGCC
GACAAATCCGAGTGA
Translation:
MMLQQFLQDFGYFALFLGTFFEGETILVLAGFLAFRGYMQLDTVILTAFLGSYAGDQLWYFLGRRHGRRLLA
RKPRWQKLGDKALDHVRRHPDLWVLSFRFVYGLRTVMPVAIGLSGYPPARYLLLNGIGAIVWAAALGSAAYY
FGSVLEGMLGNIKKYELMVLGGLIVLGLLLWLWRRFKTPRGNGAGGNADKSE*
AnnotationID:3844GeneID:3837
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:31
Gene Name:
Confidence Code:3
GeneProduct:putative membrane-associated protein
Cell Localization:()
Synonyms:PA5244
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0586
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70783.1|AE016722_4 (AE016793) DedA family protein [Pseudomonas putida KT2440]
          Length = 214

 Score =  325 bits (832), Expect = 1e-88
 Identities = 152/183 (83%), Positives = 169/183 (92%)

>gb|AAO58678.1| (AE016875) DedA family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 220

 Score =  317 bits (813), Expect = 2e-86
 Identities = 151/183 (82%), Positives = 167/183 (91%)

Structural Features:
COG0586, DedA, Uncharacterized membrane-associated protein 
CD-Length = 208 residues,  92.8% aligned
Score =  123 bits (311), Expect = 1e-29
Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 4/193 (2%)
Genomic Context:
Comment:
ReferenceID:7677
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24819
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34822
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3837_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3837

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6061 PA5244_tr translation of PA5244 196 99.99 99.99 0 1033.0
169111 gb|AAG08629.1|AE004937_1 (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 196 99.99 99.99 0 1033.0
169112 gb|AAN70783.1|AE016722_4 (AE016793) DedA family protein [Pseudomonas putida KT2440] 215 72.09 80.00 20 831.0
169113 gb|AAO58678.1| (AE016875) DedA family protein [Pseudomonas syringae pv. tomato str. DC3000] 222 68.91 76.57 28 808.0
GC ORFID: 46839How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5244Glimmer Score:
Start: 5441771Stop: 5442361
Length: 591
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5244 translation of PA5244Homolog Bit Score 402.0
Other Homologs: t_PA5244 (ORF: GLIMMER)
GC ORF Sequence
ATGATGCTCCAACAATTCCTGCAGGACTTCGGCTATTTCGCCCTTTTTCTCGGTACTTTCTTCGAGGGCGAA
ACCATTCTCGTGCTGGCCGGGTTCCTTGCCTTCCGCGGCTACATGCAGCTGGATACCGTGATTCTCACCGCC
TTCCTCGGCAGCTACGCCGGTGACCAACTCTGGTACTTCCTCGGACGCCGCCACGGCCGCCGGTTGCTGGCG
CGCAAGCCGCGCTGGCAGAAGCTCGGCGACAAGGCGCTGGACCATGTGCGCCGCCATCCTGACCTGTGGGTG
CTGAGTTTCCGCTTCGTCTACGGCCTGCGTACGGTGATGCCGGTGGCCATCGGCCTGTCCGGCTATCCACCG
GCCCGCTATCTTCTTCTCAACGGCATCGGCGCCATCGTCTGGGCCGCCGCGCTGGGCTCCGCCGCCTACTAT
TTCGGCAGCGTACTGGAAGGCATGCTCGGCAACATCAAGAAATACGAACTCATGGTCCTCGGCGGCCTGATC
GTGCTGGGCCTGCTGCTCTGGCTATGGCGGCGTTTCAAGACACCGCGCGGCAACGGCGCGGGCGGCAACGCC
GACAAATCCGAGTGA