ViewGene
Locus Name:
GeneID:
Location:

GeneID:3836
TrivialName: PA14_66850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66850
PAO1 Ortholog Locus:PA5059
Sequence Length:618
Protein Length:205
Start: 5971481
Stop: 5972098
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08444.1|AE004919_5 (AE004919) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 204/205 (99%), Positives = 204/205 (99%)
Sequence:
ATGAAGACACGCGACCGTATCCTCGAATGCTCGCTGTTGCTGTTCAACGAACAGGGCGAACCCAACGTCTCG
ACACTGGAAATCGCCAACGAACTGGGCATCAGCCCGGGCAATCTCTACTACCACTTCCATGGCAAGGAACCG
CTGGTGATGGCGCTGTTCGAGCGGTTCCAGGCCGAGTTGGCGCCGCTGCTCGATCCGCCCGAGGAGGTGCGC
CTGGGCGCGGAGGACTACTGGCTGTTCCTGCATCTGATCGTCGAGCGCCTCGCCCACTACCGCTTCCTGTTC
CAGGACCTGTCCAACCTGACCGGGCGCCTGCCACGGCTGGCTCGCGGCATCCGTACCTGGCTCGGCGCGCTG
AAGCGGACCCTGGCCACCCTGTTGGCCCGCCTAAAGACCGACCGGCAGTTGCGCAGCGATGCGCCGGCACTC
GGGCAACTGGTCGAACAGATCACCCTGACCCTGCTGTTCTCCTTGGATTACCAGCGGGTACTGGGCAGCAAG
GGCGAGGTGCGCACGGTGGTCTACCAGATCATGATGCTGGTCGCCCCGCATCTGCGCAGCGAGGCCCAACGC
TCGGCGGAAAGCCTGGCGCAGCGCTACCTGGGACCGGAATGA
Translation:
MKTRDRILECSLLLFNEQGEPNVSTLEIANELGISPGNLYYHFHGKEPLVMALFERFQAELAPLLDPPEEVR
LGAEDYWLFLHLIVERLAHYRFLFQDLSNLTGRLPRLARGIRTWLGALKRTLATLLARLKTDRQLRSDAPAL
GQLVEQITLTLLFSLDYQRVLGSKGEVRTVVYQIMMLVAPHLRSEAQRSAESLAQRYLGPE*
AnnotationID:3843GeneID:3836
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 12:12:33
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA5059, phaD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440,COG1309
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB78722.1| (AB049413) phaD [Pseudomonas chlororaphis]
          Length = 206

 Score =  315 bits (806), Expect = 1e-85
 Identities = 157/202 (77%), Positives = 173/202 (85%)

>gb|AAO58572.1| (AE016874) transcriptional regulator PhaD [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 204

 Score =  314 bits (805), Expect = 2e-85
 Identities = 154/203 (75%), Positives = 174/203 (85%)

>gb|AAN70572.1|AE016699_13 (AE016792) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 204

 Score =  314 bits (805), Expect = 2e-85
 Identities = 156/202 (77%), Positives = 178/202 (88%)






 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.

COG1309, AcrR, Transcriptional regulator [Transcription]






   
Genomic Context:






   
Comment:


















    ReferenceID:7675




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24817




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35003




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3836_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3836
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6060
                           PA5059_tr
                           translation of PA5059
                           205
                           99.51
                           99.51
                           0
                           1034.0
     

     
     
169102
                           gb|AAG08444.1|AE004919_5
                           (AE004919) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           205
                           99.51
                           99.51
                           0
                           1034.0
     

     
     
169103
                           emb|CAA47154.1|
                           (X66592) unnamed protein product [Pseudomonas aeruginosa]
                           205
                           99.02
                           99.51
                           0
                           1031.0
     

     
     
169108
                           gb|AAD02216.1|
                           (AF042276) unknown [Pseudomonas putida]
                           206
                           76.69
                           86.40
                           3
                           798.0
     

     
     
169105
                           dbj|BAB78722.1|
                           (AB049413) phaD [Pseudomonas chlororaphis]
                           206
                           76.21
                           83.98
                           1
                           804.0
     

     






      

          
GC ORFID: 46838How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5059Glimmer Score: 

          
Start: 5235164Stop: 5235781

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5059 translation of PA5059Homolog Bit Score 402.0

          
Other Homologs:  t_PA5059 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGACACGCGACCGTATCCTCGAATGCTCGCTGTTGCTGTTCAACGAACAGGGCGAACCCAACGTCTCG 
ACACTGGAAATCGCCAACGAACTGGGCATCAGCCCGGGCAATCTCTACTACCACTTCCATGGCAAGGAACCG 
CTGGTGATGGCGCTGTTCGAGCGGTTCCAGGCCGAGTTGGCGCCGCTGCTCGATCCGCCCGAGGAGGTGCGC 
CTGGGCGCGGAGGACTACTGGCTGTTCCTGCATCTGATCGTCGAGCGCCTCGCCCACTACCGCTTCCTGTTC 
CAGGACCTGTCCAACCTGACCGGGCGCCTGCCACGGCTGGCTCGCGGCATCCGTACCTGGCTCGGCGCGCTG 
AAGCGGACCCTGGCCACCCTGTTGGCCCGCCTAAAGACCGACCGGCAGTTGCGCAGCGATGCGCCGGCACTC 
GGGCAACTGGTCGAACAGATCACCCTGACCCTGCTGTTCTCCTTGGATTACCAGCGGGTACTGGGCAGCAAG 
GGCGAGGTGCGCACGGTGGTCTACCAGATCATGATGCTGGTCGCCCCGCATCTGCGCAGCGAGGCCCAACGC 
TCGGCGGAAAGCCTGGCGCAGCGCTACCTGGGACCGGAATGA