ViewGene

Locus Name:
GeneID:
Location:

GeneID:3835
TrivialName: PA14_60500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60500
PAO1 Ortholog Locus:PA4572
Sequence Length:618
Protein Length:205
Start: 5393717
Stop: 5393100
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07960.1|AE004870_11 (AE004870) peptidyl-prolyl cis-trans isomerase FklB [Pseudomonas aeruginosa PAO1]
Identities = 205/205 (100%), Positives = 205/205 (100%)
Sequence:
ATGAGCGAACTCAACCTGACCACTGACGAAGCCCGTGTCAGCTACGGCATCGGCCGTCAACTGGGCGACCAA
CTGCGCGAGAATCCGGTTCCAGGCATGACCCTGGACGCAGTCCTGGCCGGCCTGTCCGATGCGTTCGCAGGT
ATCGACAGCCGGGTTTCCGGCGAGGCGCTGTCGGCCAGCTTCCAGGTGATCCGCGAACGCATGCAGGCCGAA
GCCCAGGCCAAGGCCGAAGCCGCCGCTGGCGAAGGCCGCGCCTACCTGGCCGAGAACGCCAAGCGCGAAGGC
GTGACCGTGCTGCCGTCGGGCCTGCAATTCGAAGTGCTGAGTACTGGCGAGGGCGCCAAGCCTTCCCGCGAG
GATACCGTGCGCACCCACTACCACGGCACCCTGATCGACGGCACCGTATTCGACAGCTCCTACCAGCGCGGC
CAGCCGGCCGAGTTCCCGGTGGGCGGCGTGATCGCCGGCTGGGTCGAAGCGCTGCAACTGATGAACGCCGGC
TCCAAGTGGCGCCTGCACGTACCGAGCGAACTGGCCTATGGCGGCCAGGCGGTCGGCAGCATTCCCCCGCAC
AGCGTGCTGGTGTTCGACGTCGAACTGCTGGAAATCCTCTGA
Translation:
MSELNLTTDEARVSYGIGRQLGDQLRENPVPGMTLDAVLAGLSDAFAGIDSRVSGEALSASFQVIRERMQAE
AQAKAEAAAGEGRAYLAENAKREGVTVLPSGLQFEVLSTGEGAKPSREDTVRTHYHGTLIDGTVFDSSYQRG
QPAEFPVGGVIAGWVEALQLMNAGSKWRLHVPSELAYGGQAVGSIPPHSVLVFDVELLEIL*
AnnotationID:3842GeneID:3835
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 08:08:03
Gene Name:fklB
Confidence Code:2
GeneProduct:FKBP-type peptidyl-prolyl cis-trans isomerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0545,pfam00254,KOG0544
Secondary Functional Category(ies):
EC Number:5.2.1.8
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66309.1|AE016259_7 (AE016776) peptidyl-prolyl cis-trans isomerase, FKBP-type
           [Pseudomonas putida KT2440]
          Length = 205

 Score =  335 bits (860), Expect = 8e-92
 Identities = 167/205 (81%), Positives = 184/205 (89%)

>gb|AAO58027.1| (AE016872) peptidyl-prolyl cis-trans isomerase, FKBP-type
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 224

 Score =  328 bits (842), Expect = 9e-90
 Identities = 163/205 (79%), Positives = 180/205 (87%)

>gb|AAN45697.1|AE015436_1 (AE015436) FKBP-type 22KD peptidyl-prolyl cis-trans isomerase
           [Shigella flexneri 2a str. 301]
          Length = 223

 Score =  211 bits (536), Expect = 3e-54
 Identities = 112/206 (54%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
Structural Features:
COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 205 residues, 100.0% aligned
Score =  231 bits (589), Expect = 1e-61
Identities = 105/206 (50%), Positives = 137/206 (66%), Gaps = 2/206 (0%)

pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.
CD-Length = 95 residues, 100.0% aligned
Score =  105 bits (263), Expect = 8e-24
Identities = 55/96 (57%), Positives = 64/96 (66%), Gaps = 6/96 (6%)

KOG0544, FKBP-type peptidyl-prolyl cis-trans isomerase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 108 residues,  98.1% aligned
Score = 98.4 bits (245), Expect = 1e-21
Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Genomic Context:
Comment:
ReferenceID:7673
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24815
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31642
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3835_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3835

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6058 PA4572_tr translation of PA4572 205 99.99 99.99 0 1033.0
168905 gb|AAG07960.1|AE004870_11 (AE004870) peptidyl-prolyl cis-trans isomerase FklB [Pseudomonas aeruginosa PAO1] 205 99.99 99.99 0 1033.0
168906 gb|AAN66309.1|AE016259_7 (AE016776) peptidyl-prolyl cis-trans isomerase, FKBP-type [Pseudomonas putida KT2440] 205 81.46 89.75 0 860.0
168907 gb|AAO58027.1| (AE016872) peptidyl-prolyl cis-trans isomerase, FKBP-type [Pseudomonas syringae pv. tomato str. DC3000] 224 72.76 80.35 19 842.0
168908 gb|AAN54209.1|AE015558_3 (AE015558) peptidyl-prolyl cis-trans isomerase FklB [Shewanella oneidensis MR-1] 207 60.38 74.39 4 594.0
GC ORFID: 46837How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4572Glimmer Score:
Start: 4657397Stop: 4656780
Length: 618
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4572 translation of PA4572Homolog Bit Score 402.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5418 (ORF: BLASTX 325.0), t_PA4572 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGAACTCAACCTGACCACTGACGAAGCCCGTGTCAGCTACGGCATCGGCCGTCAACTGGGCGACCAA
CTGCGCGAGAATCCGGTTCCAGGCATGACCCTGGACGCAGTCCTGGCCGGCCTGTCCGATGCGTTCGCAGGT
ATCGACAGCCGGGTTTCCGGCGAGGCGCTGTCGGCCAGCTTCCAGGTGATCCGCGAACGCATGCAGGCCGAA
GCCCAGGCCAAGGCCGAAGCCGCCGCTGGCGAAGGCCGCGCCTACCTGGCCGAGAACGCCAAGCGCGAAGGC
GTGACCGTGCTGCCGTCGGGCCTGCAATTCGAAGTGCTGAGTACTGGCGAGGGCGCCAAGCCTTCCCGCGAG
GATACCGTGCGCACCCACTACCACGGCACCCTGATCGACGGCACCGTATTCGACAGCTCCTACCAGCGCGGC
CAGCCGGCCGAGTTCCCGGTGGGCGGCGTGATCGCCGGCTGGGTCGAAGCGCTGCAACTGATGAACGCCGGC
TCCAAGTGGCGCCTGCACGTACCGAGCGAACTGGCCTATGGCGGCCAGGCGGTCGGCAGCATTCCCCCGCAC
AGCGTGCTGGTGTTCGACGTCGAACTGCTGGAAATCCTCTGA