ViewGene
Locus Name:
GeneID:
Location:

GeneID:3834
TrivialName: PA14_26500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26500
PAO1 Ortholog Locus:PA2905
Sequence Length:627
Protein Length:208
Start: 2309629
Stop: 2310255
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06293.1|AE004716_11 (AE004716) precorrin isomerase CobH [Pseudomonas aeruginosa PAO1]
Identities = 208/208 (100%), Positives = 208/208 (100%)
Sequence:
ATGATTGACTACATCCGCGATGGCCAGGCGATCTATCGCCAGTCGTTCGCCACCATCCGCGCCGAAGCGAAC
CTCGCCGGCATCCCGGCCGACCTGGAAAAGCTCGCGGTCAGGGTGATCCACGCCTGCGGCATGGTCGACGTG
GTCGACGACCTGCGCTTCTCGCCCGGCGCCGGCGCCGCCGGCCGCGCCGCGCTGGCCGCCGGCGCGGCGATC
CTCTGCGACGCGCGGATGGTCGCCGAAGGCGTGACCCGCTCGCGGCTGCCCGCCGCCAACCGGGTGATCTGT
ACCCTCAACGAAGCGGACGTGCCGGCGCTCGCCACGGAACTCGGCAATACCCGCTCGGCGGTGGCCCTGGAG
CACTGGCGCGAGCACCTGGAGGGCAGCGTGGTGGTGATCGGCAACGCGCCGACCGCGCTGTTCTACCTGCTG
GAAATGCTCGACGCCGGCGCGCCGAAACCGGCGCTGATCCTGGGCTTCCCGGTCGGCTTCGTCGGCGCCGCG
GAATCCAAGGAGATGCTCGCCGCCGATAGCCGCGGGGTGCCCTACGTGATCGTCCGCGGTCGCCGTGGCGGC
AGCGCCATGGCCGCCGCGGCGGTGAACGCCCTGGCCACGGAGCGCGAATGA
Translation:
MIDYIRDGQAIYRQSFATIRAEANLAGIPADLEKLAVRVIHACGMVDVVDDLRFSPGAGAAGRAALAAGAAI
LCDARMVAEGVTRSRLPAANRVICTLNEADVPALATELGNTRSAVALEHWREHLEGSVVVIGNAPTALFYLL
EMLDAGAPKPALILGFPVGFVGAAESKEMLAADSRGVPYVIVRGRRGGSAMAAAAVNALATERE*
AnnotationID:3841GeneID:3834
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 20:08:47
Gene Name:cobH
Confidence Code:2
GeneProduct:precorrin isomerase CobH
Cell Localization:()
Synonyms:cbiC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:precorrin-8X methylmutase
Functional Category Confidence Code:5
COGs:pfam02570
Secondary Functional Category(ies):
EC Number:5.4.1.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58305.1| (AE016873) precorrin-8X methylmutase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 208

 Score =  335 bits (860), Expect = 8e-92
 Identities = 173/208 (83%), Positives = 187/208 (89%)

>gb|AAN70397.1|AE016681_6 (AE016792) precorrin-8X methylmutase [Pseudomonas putida KT2440]
          Length = 208

 Score =  323 bits (827), Expect = 5e-88
 Identities = 168/208 (80%), Positives = 179/208 (86%)

>gb|AAN30205.1|AE014427_2 (AE014427) precorrin-8X methylmutase [Brucella suis 1330]
          Length = 208

 Score =  320 bits (820), Expect = 3e-87
 Identities = 165/208 (79%), Positives = 180/208 (86%)






 
Structural Features:
pfam02570, CbiC, Precorrin-8X methylmutase
CD-Length = 194 residues, 100.0% aligned
Score =  152 bits (386), Expect = 2e-38
Identities = 87/202 (43%), Positives = 115/202 (56%), Gaps = 9/202 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7671




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24813




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36139




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3834_cdd.html


    		




 
URL:

















    ReferenceID:36413




  
Author/Investigator(s):
        Crouzet J, Cameron B, Cauchois L, Rigault S, Rouyez MC, Blanche F, Thibaut D, Debussche L.





  
Title:
        Genetic and sequence analysis of an 8.7-kilobase Pseudomonas denitrificans fragment carrying eight genes involved in transformation of precorrin-2 to cobyrinic acid.




  
PubMed:
        2211521


MedLine:
        




    
Source:
J Bacteriol. 1990 Oct;172(10):5980-90.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2211521









           
Homologs By Global Alignment 

           

       



     
Gene ID:3834
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6057
                           PA2905_tr
                           translation of PA2905
                           208
                           99.99
                           99.99
                           0
                           1033.0
     

     
     
168880
                           gb|AAG06293.1|AE004716_11
                           (AE004716) precorrin isomerase CobH [Pseudomonas aeruginosa PAO1]
                           208
                           99.99
                           99.99
                           0
                           1033.0
     

     
     
168881
                           gb|AAO58305.1|
                           (AE016873) precorrin-8X methylmutase [Pseudomonas syringae pv. tomato str. DC3000]
                           208
                           83.17
                           89.90
                           0
                           860.0
     

     
     
168882
                           gb|AAN70397.1|AE016681_6
                           (AE016792) precorrin-8X methylmutase [Pseudomonas putida KT2440]
                           208
                           80.76
                           86.05
                           0
                           827.0
     

     
     
168883
                           gb|AAN30205.1|AE014427_2
                           (AE014427) precorrin-8X methylmutase [Brucella suis 1330]
                           208
                           79.32
                           86.53
                           0
                           820.0
     

     






      

          
GC ORFID: 46836How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2905Glimmer Score: 

          
Start: 2644297Stop: 2643671

          
Length: 627


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2905 translation of PA2905Homolog Bit Score 402.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5297 (ORF: BLASTX 335.0), t_PA2905 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTGACTACATCCGCGATGGCCAGGCGATCTATCGCCAGTCGTTCGCCACCATCCGCGCCGAAGCGAAC 
CTCGCCGGCATCCCGGCCGACCTGGAAAAGCTCGCGGTCAGGGTGATCCACGCCTGCGGCATGGTCGACGTG 
GTCGACGACCTGCGCTTCTCGCCCGGCGCCGGCGCCGCCGGCCGCGCCGCGCTGGCCGCCGGCGCGGCGATC 
CTCTGCGACGCGCGGATGGTCGCCGAAGGCGTGACCCGCTCGCGGCTGCCCGCCGCCAACCGGGTGATCTGT 
ACCCTCAACGAAGCGGACGTGCCGGCGCTCGCCACGGAACTCGGCAATACCCGCTCGGCGGTGGCCCTGGAG 
CACTGGCGCGAGCACCTGGAGGGCAGCGTGGTGGTGATCGGCAACGCGCCGACCGCGCTGTTCTACCTGCTG 
GAAATGCTCGACGCCGGCGCGCCGAAACCGGCGCTGATCCTGGGCTTCCCGGTCGGCTTCGTCGGCGCCGCG 
GAATCCAAGGAGATGCTCGCCGCCGATAGCCGCGGGGTGCCCTACGTGATCGTCCGCGGTCGCCGTGGCGGC 
AGCGCCATGGCCGCCGCGGCGGTGAACGCCCTGGCCACGGAGCGCGAATGA