ViewGene

Locus Name:
GeneID:
Location:

GeneID:3833
TrivialName: PA14_49050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49050
PAO1 Ortholog Locus:PA1190
Sequence Length:600
Protein Length:199
Start: 4356601
Stop: 4357200
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04579.1|AE004549_6 (AE004549) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 199/199 (100%), Positives = 199/199 (100%)
Sequence:
ATGATCCATCATGTATGGGGGCTCTTCACCCATCCCGATCAGGAATGGCAGGAAATCCGTGGCGAAGAAGAA
AGCATCAGCCACATGTACCTGACCCACATCCTGATCCTGGCTGCCATTCCGGCGATTTCCGCCTATATCGGC
ACGACCCAGGTCGGCTGGGTGGTCGGCGGCGGCGATCCGGTCAAGCTGACCCAGGCCAGCGCGTTGCAGATG
ACGGTCCTCACCTACCTGGCGATGCTCGCCGGGGTGGCGGTGATGGGCGCGTTCATCCACTGGATGGCGCGG
ACCTACGACGCCAACCCGAGCCTGACCCAGTGCATCGTGTTCGCCGCCTACAACGCCACGCCGCTGTTCATC
GCCGGGCTGGCGGCGCTGTATCCGCACCTCTGGCTGGGAATGATCGTCGGGGTGGCGGCGATCAGCTACACG
GTCTACCTGCTCTACGTGGGGATTCCCACCTTCATGAACATCCACAAGGACGAAGGCTTCCTGTTCTCCAGC
TCGGTGCTGGCGGTGGGCCTGGTGGTGCTGGTGGCGATGATCGCCCTGTCGGTGATCCTCTGGGGCAGCGGG
GTCGGCCCGGAATACACCAGCTGA
Translation:
MIHHVWGLFTHPDQEWQEIRGEEESISHMYLTHILILAAIPAISAYIGTTQVGWVVGGGDPVKLTQASALQM
TVLTYLAMLAGVAVMGAFIHWMARTYDANPSLTQCIVFAAYNATPLFIAGLAALYPHLWLGMIVGVAAISYT
VYLLYVGIPTFMNIHKDEGFLFSSSVLAVGLVVLVAMIALSVILWGSGVGPEYTS*
AnnotationID:3840GeneID:3833
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 11:11:27
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:yohC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL21073.1| (AE008796) putative transport protein [Salmonella typhimurium LT2]
          Length = 195

 Score =  234 bits (596), Expect = 3e-61
 Identities = 108/191 (56%), Positives = 146/191 (76%)

>gb|AAO68384.1| (AE016836) putative membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 195

 Score =  234 bits (596), Expect = 3e-61
 Identities = 108/191 (56%), Positives = 146/191 (76%)

>gb|AAN81123.1|AE016763_82 (AE016763) Hypothetical protein yohC [Escherichia coli CFT073]
          Length = 203

 Score =  233 bits (593), Expect = 7e-61
 Identities = 112/189 (59%), Positives = 141/189 (74%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:7669
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24811
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3833

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6056 PA1190_tr translation of PA1190 199 99.99 99.99 0 1032.0
168865 gb|AAG04579.1|AE004549_6 (AE004549) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 199 99.99 99.99 0 1032.0
168866 gb|AAN67261.1|AE016353_1 (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440] 199 79.39 88.94 0 847.0
168875 gb|AAP17562.1| (AE016985) hypothetical protein S2349 [Shigella flexneri 2a str. 2457T] 200 55.50 71.00 6 577.0
168873 gb|AAG57267.1|AE005445_4 (AE005445) orf, hypothetical protein [Escherichia coli O157:H7 EDL933] 207 54.58 68.59 12 581.0
GC ORFID: 46835How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1190Glimmer Score:
Start: 597307Stop: 596708
Length: 600
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1190 translation of PA1190Homolog Bit Score 402.0
Other Homologs: t_PA1190 (ORF: GLIMMER)
GC ORF Sequence
ATGATCCATCATGTATGGGGGCTCTTCACCCATCCCGATCAGGAATGGCAGGAAATCCGTGGCGAAGAAGAA
AGCATCAGCCACATGTACCTGACCCACATCCTGATCCTGGCTGCCATTCCGGCGATTTCCGCCTATATCGGC
ACGACCCAGGTCGGCTGGGTGGTCGGCGGCGGCGATCCGGTCAAGCTGACCCAGGCCAGCGCGTTGCAGATG
ACGGTCCTCACCTACCTGGCGATGCTCGCCGGGGTGGCGGTGATGGGCGCGTTCATCCACTGGATGGCGCGG
ACCTACGACGCCAACCCGAGCCTGACCCAGTGCATCGTGTTCGCCGCCTACAACGCCACGCCGCTGTTCATC
GCCGGGCTGGCGGCGCTGTATCCGCACCTCTGGCTGGGAATGATCGTCGGGGTGGCGGCGATCAGCTACACG
GTCTACCTGCTCTACGTGGGGATTCCCACCTTCATGAACATCCACAAGGACGAAGGCTTCCTGTTCTCCAGC
TCGGTGCTGGCGGTGGGCCTGGTGGTGCTGGTGGCGATGATCGCCCTGTCGGTGATCCTCTGGGGCAGCGGG
GTCGGCCCGGAATACACCAGCTGA