ViewGene
Locus Name:
GeneID:
Location:

GeneID:3831
TrivialName: PA14_04680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04680
PAO1 Ortholog Locus:PA0358
Sequence Length:579
Protein Length:192
Start: 416181
Stop: 416759
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03747.1|AE004473_9 (AE004473) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 191/192 (99%), Positives = 191/192 (99%)
Sequence:
ATGTCCGGCAATTACCTGCCTCGCAACACCCTGGTCGAGTCGCTCGGCCATGCCATGCTGAAACTCTCCGGC
TGGAAGATCGAGGGCCAATTGCCCGCGCTCGACAAGTTCGTGGTGATCGGCGCCCACCACACCTCGAACTGG
GACTTCGTGGCCTTCCTCGCCGCCAAGTTCGTCCTGCGCCTGAACGCCCGCTGGTTCGGCAAGCACACCCTG
TTCAAGGGCCCGCTGGGCGGCCTGATGCGGCGCTGGGGTGGCATCCCGATCCAGCGCCACCTGAAGCTGAAT
ACCGTGGACCAGGCGATCCAGGCCTTCCGCGAGCACCGTGAGTTCATGCTGATCATCGCTCCGGAAGGCACG
CGCAAGAAGGTCGACCGCTGGCGCATGGGCTTCTACCACATCGCCCGTGGCGCCGGCGTACCGGTGGTGCCG
GCGGCGCTGGACTACGAAAACCGGCGGATCGTCATCGGCGAACCCTTCTGGCCGACCGGCAACGAGGACGCC
GACCTGTGCAGCCTGATCGGCTTCTACCGGCCGTTCATCCCGAAAAAGCCGCACTACGCATTCCTCGGCGAT
TGA
Translation:
MSGNYLPRNTLVESLGHAMLKLSGWKIEGQLPALDKFVVIGAHHTSNWDFVAFLAAKFVLRLNARWFGKHTL
FKGPLGGLMRRWGGIPIQRHLKLNTVDQAIQAFREHREFMLIIAPEGTRKKVDRWRMGFYHIARGAGVPVVP
AALDYENRRIVIGEPFWPTGNEDADLCSLIGFYRPFIPKKPHYAFLGD*
AnnotationID:3838GeneID:3831
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 18:06:17
Gene Name:
Confidence Code:3
GeneProduct:putative phosphate acyltransferase
Cell Localization:()
Synonyms:PA0358
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00563
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00563, PlsC, Phosphate acyltransferase
CD-Length = 118 residues,  99.2% aligned
Score = 70.4 bits (172), Expect = 1e-13
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 9/119 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7665




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24807




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33698




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3831_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3831
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6053
                           PA0358_tr
                           translation of PA0358
                           192
                           99.47
                           99.47
                           0
                           1036.0
     

     
     
168655
                           gb|AAG03747.1|AE004473_9
                           (AE004473) hypothetical protein PA0358 [Pseudomonas aeruginosa PAO1]
                           192
                           99.47
                           99.47
                           0
                           1036.0
     

     
     
168657
                           gb|AAK23875.1|
                           (AE005863) acyltransferase family protein [Caulobacter crescentus CB15]
                           203
                           40.88
                           52.70
                           18
                           394.0
     

     
     
168659
                           gb|AAM35139.1|
                           (AE011649) acyltransferase [Xanthomonas axonopodis pv. citri str. 306]
                           215
                           38.13
                           53.95
                           29
                           373.0
     

     
     
168661
                           gb|AAN53210.1|AE015463_7
                           (AE015463) acyltransferase family protein [Shewanella oneidensis MR-1]
                           199
                           37.68
                           50.25
                           20
                           365.0
     

     






      

          
GC ORFID: 46833How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0358Glimmer Score: 

          
Start: 6217523Stop: 6218101

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0358 translation of PA0358Homolog Bit Score 403.0

          
Other Homologs:  t_PA0358 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGGCAATTACCTGCCTCGCAACACCCTGGTCGAGTCGCTCGGCCATGCCATGCTGAAACTCTCCGGC 
TGGAAGATCGAGGGCCAATTGCCCGCGCTCGACAAGTTCGTGGTGATCGGCGCCCACCACACCTCGAACTGG 
GACTTCGTGGCCTTCCTCGCCGCCAAGTTCGTCCTGCGCCTGAACGCCCGCTGGTTCGGCAAGCACACCCTG 
TTCAAGGGCCCGCTGGGCGGCCTGATGCGGCGCTGGGGTGGCATCCCGATCCAGCGCCACCTGAAGCTGAAT 
ACCGTGGACCAGGCGATCCAGGCCTTCCGCGAGCACCGTGAGTTCATGCTGATCATCGCTCCGGAAGGCACG 
CGCAAGAAGGTCGACCGCTGGCGCATGGGCTTCTACCACATCGCCCGTGGCGCCGGCGTACCGGTGGTGCCG 
GCGGCGCTGGACTACGAAAACCGGCGGATCGTCATCGGCGAACCCTTCTGGCCGACCGGCAACGAGGACGCC 
GACCTGTGCAGCCTGATCGGCTTCTACCGGCCGTTCATCCCGAAAAAGCCGCACTACGCATTCCTCGGCGAT 
TGA