ViewGene
Locus Name:
GeneID:
Location:

GeneID:3830
TrivialName: PA14_24440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24440
PAO1 Ortholog Locus:PA3069
Sequence Length:618
Protein Length:205
Start: 2129153
Stop: 2129770
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06457.1|AE004731_5 (AE004731) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 204/205 (99%), Positives = 205/205 (100%)
Sequence:
ATGCGCGCCGGCGAATTCCTCCAGACCGATGCCGATCGCATGGCCACCCTGGCCATGCGCGACAACCTGCAA
AGCCTCTACCAGTTGCTCTGGAAGCTGTACAAGCGCAATCCCGCCGAATGGAAGAAGACCGGCCTGCCGAGC
CAGGCCGACGCCGAGCTGGCGATCCGCCGGGCCATCGAGCAGAACCGCGAACTCAGCGACCTGGGCGGCCGC
CGCGACATCGCCGCGCTGTCCTATTCCCTCGATCCGGCGTTCAGGGGCGACCGCGTCGGCGCCTTCATCTAT
TCCCTGGCCAGCATGCTGATCACCGCCCATGGCGGGCGTACCGAGTTCTACGTCTACCAGGGGATCGACGCG
CAGTACGTCTACAACGCCGCGCGCAACGTCGAGGTCGCCACCTGGATGCTGGCTACCCGCAAAGACGACAAG
GGCGCCCCGTTGCTGCTTTCCAACGCCCTCACCGACGACGCCAGCAACCTCAGCTACGCCCGCGAGTTCGCC
AAGATCGTCGCGCGCCTGGACCTGCTCGCCGAGGTGCTCGGCGAACGCTACCGGCGGATCAGCGTGAACTAC
GCCCAGGGACTGCTGTTCATGCATTTCCTGCCGGTGCAGTGA
Translation:
MRAGEFLQTDADRMATLAMRDNLQSLYQLLWKLYKRNPAEWKKTGLPSQADAELAIRRAIEQNRELSDLGGR
RDIAALSYSLDPAFRGDRVGAFIYSLASMLITAHGGRTEFYVYQGIDAQYVYNAARNVEVATWMLATRKDDK
GAPLLLSNALTDDASNLSYAREFAKIVARLDLLAEVLGERYRRISVNYAQGLLFMHFLPVQ*
AnnotationID:3837GeneID:3830
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 13:01:17
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA3069
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE35854.1| (BX640448) putative lipoprotein [Bordetella bronchiseptica]
          Length = 239

 Score =  225 bits (574), Expect = 1e-58
 Identities = 112/205 (54%), Positives = 146/205 (71%)

>emb|CAE38715.1| (BX640433) putative lipoprotein [Bordetella parapertussis]
          Length = 239

 Score =  225 bits (574), Expect = 1e-58
 Identities = 112/205 (54%), Positives = 146/205 (71%)

>emb|CAE41101.1| (BX640413) putative lipoprotein [Bordetella pertussis]
          Length = 239

 Score =  225 bits (574), Expect = 1e-58
 Identities = 112/205 (54%), Positives = 146/205 (71%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7663




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24805




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3830
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6052
                           PA3069_tr
                           translation of PA3069
                           205
                           99.51
                           99.99
                           0
                           1035.0
     

     
     
168649
                           gb|AAG06457.1|AE004731_5
                           (AE004731) hypothetical protein PA3069 [Pseudomonas aeruginosa PAO1]
                           205
                           99.51
                           99.99
                           0
                           1035.0
     

     
     
168650
                           gb|AAN68766.1|AE016508_7
                           (AE016785) conserved hypothetical protein [Pseudomonas putida KT2440]
                           245
                           54.28
                           64.08
                           40
                           662.0
     

     
     
168651
                           gb|AAK50290.1|U66917_58
                           (U66917) hypothetical protein [Pseudomonas sp. ADP]
                           257
                           49.41
                           61.47
                           52
                           663.0
     

     
     
168652
                           emb|CAE35854.1|
                           (BX640448) putative lipoprotein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           239
                           46.86
                           61.08
                           34
                           574.0
     

     






      

          
GC ORFID: 46832How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3069Glimmer Score: 

          
Start: 2824777Stop: 2824160

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3069 translation of PA3069Homolog Bit Score 403.0

          
Other Homologs:  t_PA3069 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCCGGCGAATTCCTCCAGACCGATGCCGATCGCATGGCCACCCTGGCCATGCGCGACAACCTGCAA 
AGCCTCTACCAGTTGCTCTGGAAGCTGTACAAGCGCAATCCCGCCGAATGGAAGAAGACCGGCCTGCCGAGC 
CAGGCCGACGCCGAGCTGGCGATCCGCCGGGCCATCGAGCAGAACCGCGAACTCAGCGACCTGGGCGGCCGC 
CGCGACATCGCCGCGCTGTCCTATTCCCTCGATCCGGCGTTCAGGGGCGACCGCGTCGGCGCCTTCATCTAT 
TCCCTGGCCAGCATGCTGATCACCGCCCATGGCGGGCGTACCGAGTTCTACGTCTACCAGGGGATCGACGCG 
CAGTACGTCTACAACGCCGCGCGCAACGTCGAGGTCGCCACCTGGATGCTGGCTACCCGCAAAGACGACAAG 
GGCGCCCCGTTGCTGCTTTCCAACGCCCTCACCGACGACGCCAGCAACCTCAGCTACGCCCGCGAGTTCGCC 
AAGATCGTCGCGCGCCTGGACCTGCTCGCCGAGGTGCTCGGCGAACGCTACCGGCGGATCAGCGTGAACTAC 
GCCCAGGGACTGCTGTTCATGCATTTCCTGCCGGTGCAGTGA