ViewGene
Locus Name:
GeneID:
Location:

GeneID:383
TrivialName: PA14_60130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60130
PAO1 Ortholog Locus:
Sequence Length:1920
Protein Length:639
Start: 5355824
Stop: 5357743
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84130.1| (AY273869) putative pathogenesis-related protein [Pseudomonas aeruginosa]
Identities = 639/639 (100%), Positives = 639/639 (100%)
Sequence:
ATGTTTCAACTCCTTTCCTGGATATCCAGGAAGCCGTCCCCCACCCCAACAACCAAAGCTGCCCCAGGGGGA
TTCATCCTTCCTCTGAGCAGCATGGAACTGCTCGGCACGCCTCGCCGCCGGCAGCTACTGGAGAACATCTGG
CAGCGCGCCTCGCTATCCAAGCAGCAATTCGAGGAGATCTACCGGCGGCCACTGGCCAACTATGCCGAGCTG
GTCCAGCAGCTCCCTGCTTCGGAAAATCATCACCATGCCCATCCAGGCGGGATGATCGATCACGGCCTGGAG
ATCGTGGCCTACGCACTCAAGGTACGGCAGACCTACCTGCTCCCGATCGGCGCAGCGCCGGAGTCACAGTCA
GCCCAGGCTGAAGCCTGGTCGGCCGCCGCGGCGTATGGCGCCCTGGCTCATGACATAGGCAAGATCGTCGTC
GACCTGCAGGTTGAGCTACAGGACGGCAGCACCTGGCACCCTTGGAACGGACCGATCAACCAGCCATACCGC
TTCAAGTACGTGAAGTCCCGCGAATACCAGCTCCACGGCGCTGCCTCAGCACTTCTCATCCACCAACTGCTA
CCGCGCACTGCACTCGATTGGCTCAGTCGCTTTCCAGAGCTGTGGGCTCAATTGATCTACCTGTTCGCTGGG
CAGTACGAGCACGCCGGGATCCTCGGCGAGATCATCGTGAAGGCAGACCAGGCCTCAGTTGCACAGGAGCTA
GGAGGCAATCCGGATCGAGCTCTGGCTGCACCGAAGCAGTCGCTGCAGCGGCAGTTGGCAGACGGCCTTCGC
TTCTTGGTGAAGGACAAGTTCAAGTTGAATCAACCTAGCGGCCCGTCTGATGGATGGCTGACCCAGGACGCA
CTCTGGCTGGTGAGCAAGCCTGCTGCCGATCAACTGAGAGCCTACCTGCTGGCCCAGGGTATCGATGGGGTG
CCCTCCTCTAACGCGCCGTTCTTCAGCATGCTCCAGGACCAAGCCGTCATCCAGACAAATGCCGAGGACAAG
GCCATTTGGACGGCCACGGTAGACAACGGTGCTGGATGGAGAAACAAGTTCACGCTACTCAAGATTGCTCCA
GCCTTGATCTGGACAGATGCTGCCGAGCGCCCCTCACCCTACAGCGGATCACTGGTCGTTGAAGATGGAACC
GCCTCAACGGAAAAGCCGGAAACGACCTGTGAAATTCCCAACGGGCCGGCTGAACAGCAGCAAGCACCAGAA
ACGAAGATGATGCTCCATCAACCTGCGCCGAGCGTTGCGAAACCGGCAAACGAGACGCAGGCGATTGCGAAA
CCCTCAACTGATGATCAAGAAGAAACAGACGATTTGTATGCACTTCTTGGTAATATCAATTCGCCACTAGAA
GAGCTAGACACTAGCCACGACTCGCCGGCTGCCTCTCCTACGAACACACGCGGGGAGGAGAACCTACAGCAG
CCACTAGGGACCAAGGAGCCAACAGATTGCGCTCCTGAAGCAATTGAAGATGTATTTATGCCTAGCAGAAGT
ACTGATCTGGGACAGGGATTCGTTGGTTGGATGAAATCTGGCATCGCGGCCCGTCGCCTGTTCATCAACGAC
ACCAAGGCTTTGGTGCATACCGTAGACGGGACCGCCATGCTGGTCACGCCAGGAATTTTCAAGCGCTATGTC
CAAGAGCATCCGGTGCTTGAAAAACTGGCCCAAGCCAAGGAGACGACCGGCTGGAAGCTGGTGCAGCGCGCG
TTCGAAAAACAGGGGCTTCATCGGAAGACCAGTAAAAACCTGAACATCTGGACCATCAAGGTTTCTGGTCCT
CGCAAGACGAAAGAGCTCAAGGCCTACCTGCTCCAGGATCCCAAATTGCTGTTCCCTGAGCAGCCTCTGGAC
AACCCAAGCCTCACGGTCATCACCGATGCCGAAGGAGGTGTGGAATGA
Translation:
MFQLLSWISRKPSPTPTTKAAPGGFILPLSSMELLGTPRRRQLLENIWQRASLSKQQFEEIYRRPLANYAEL
VQQLPASENHHHAHPGGMIDHGLEIVAYALKVRQTYLLPIGAAPESQSAQAEAWSAAAAYGALAHDIGKIVV
DLQVELQDGSTWHPWNGPINQPYRFKYVKSREYQLHGAASALLIHQLLPRTALDWLSRFPELWAQLIYLFAG
QYEHAGILGEIIVKADQASVAQELGGNPDRALAAPKQSLQRQLADGLRFLVKDKFKLNQPSGPSDGWLTQDA
LWLVSKPAADQLRAYLLAQGIDGVPSSNAPFFSMLQDQAVIQTNAEDKAIWTATVDNGAGWRNKFTLLKIAP
ALIWTDAAERPSPYSGSLVVEDGTASTEKPETTCEIPNGPAEQQQAPETKMMLHQPAPSVAKPANETQAIAK
PSTDDQEETDDLYALLGNINSPLEELDTSHDSPAASPTNTRGEENLQQPLGTKEPTDCAPEAIEDVFMPSRS
TDLGQGFVGWMKSGIAARRLFINDTKALVHTVDGTAMLVTPGIFKRYVQEHPVLEKLAQAKETTGWKLVQRA
FEKQGLHRKTSKNLNIWTIKVSGPRKTKELKAYLLQDPKLLFPEQPLDNPSLTVITDAEGGVE*
AnnotationID:392GeneID:383
AnnotatorUID: diggins
Modification Date/Time: 2006-01-27 08:08:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
The ORF has been reported to be related to pathogensis.


















    ReferenceID:769




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17911




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:383
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
29562
                           gb|AAP84130.1|
                           (AY273869) putative pathogenesis-related protein [Pseudomonas aeruginosa]
                           639
                           99.99
                           99.99
                           0
                           3335.0
     

     
     
29563
                           gb|AAP94681.1|
                           (AY258138) conserved hypothetical protein [Pseudomonas aeruginosa]
                           639
                           90.14
                           91.70
                           31
                           3019.0
     

     
     
29565
                           gb|AAL99262.1|
                           (AY083467) hypothetical protein [Pseudomonas syringae]
                           673
                           53.49
                           66.27
                           69
                           1791.0
     

     
     
29564
                           gb|AAO54371.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           670
                           53.43
                           66.26
                           59
                           1795.0
     

     
     
29566
                           gb|AAF84562.1|AE003998_4
                           (AE003998) hypothetical protein [Xylella fastidiosa 9a5c]
                           662
                           50.45
                           66.16
                           69
                           1680.0
     

     






      

          
GC ORFID: 43385How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL003Glimmer Score: 

          
Start: 4619503Stop: 4621422

          
Length: 1920


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL003 639 Homolog: XF1753 / Pathogenicity-related / X.fastidiosa / 9a5c (AAF84562) translation of RL003Homolog Bit Score 1289.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1661 (ORF: BLASTX 690.0), t_RS03 (ORF: BLASTX 242.0), t_RL003 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTCAACTCCTTTCCTGGATATCCAGGAAGCCGTCCCCCACCCCAACAACCAAAGCTGCCCCAGGGGGA 
TTCATCCTTCCTCTGAGCAGCATGGAACTGCTCGGCACGCCTCGCCGCCGGCAGCTACTGGAGAACATCTGG 
CAGCGCGCCTCGCTATCCAAGCAGCAATTCGAGGAGATCTACCGGCGGCCACTGGCCAACTATGCCGAGCTG 
GTCCAGCAGCTCCCTGCTTCGGAAAATCATCACCATGCCCATCCAGGCGGGATGATCGATCACGGCCTGGAG 
ATCGTGGCCTACGCACTCAAGGTACGGCAGACCTACCTGCTCCCGATCGGCGCAGCGCCGGAGTCACAGTCA 
GCCCAGGCTGAAGCCTGGTCGGCCGCCGCGGCGTATGGCGCCCTGGCTCATGACATAGGCAAGATCGTCGTC 
GACCTGCAGGTTGAGCTACAGGACGGCAGCACCTGGCACCCTTGGAACGGACCGATCAACCAGCCATACCGC 
TTCAAGTACGTGAAGTCCCGCGAATACCAGCTCCACGGCGCTGCCTCAGCACTTCTCATCCACCAACTGCTA 
CCGCGCACTGCACTCGATTGGCTCAGTCGCTTTCCAGAGCTGTGGGCTCAATTGATCTACCTGTTCGCTGGG 
CAGTACGAGCACGCCGGGATCCTCGGCGAGATCATCGTGAAGGCAGACCAGGCCTCAGTTGCACAGGAGCTA 
GGAGGCAATCCGGATCGAGCTCTGGCTGCACCGAAGCAGTCGCTGCAGCGGCAGTTGGCAGACGGCCTTCGC 
TTCTTGGTGAAGGACAAGTTCAAGTTGAATCAACCTAGCGGCCCGTCTGATGGATGGCTGACCCAGGACGCA 
CTCTGGCTGGTGAGCAAGCCTGCTGCCGATCAACTGAGAGCCTACCTGCTGGCCCAGGGTATCGATGGGGTG 
CCCTCCTCTAACGCGCCGTTCTTCAGCATGCTCCAGGACCAAGCCGTCATCCAGACAAATGCCGAGGACAAG 
GCCATTTGGACGGCCACGGTAGACAACGGTGCTGGATGGAGAAACAAGTTCACGCTACTCAAGATTGCTCCA 
GCCTTGATCTGGACAGATGCTGCCGAGCGCCCCTCACCCTACAGCGGATCACTGGTCGTTGAAGATGGAACC 
GCCTCAACGGAAAAGCCGGAAACGACCTGTGAAATTCCCAACGGGCCGGCTGAACAGCAGCAAGCACCAGAA 
ACGAAGATGATGCTCCATCAACCTGCGCCGAGCGTTGCGAAACCGGCAAACGAGACGCAGGCGATTGCGAAA 
CCCTCAACTGATGATCAAGAAGAAACAGACGATTTGTATGCACTTCTTGGTAATATCAATTCGCCACTAGAA 
GAGCTAGACACTAGCCACGACTCGCCGGCTGCCTCTCCTACGAACACACGCGGGGAGGAGAACCTACAGCAG 
CCACTAGGGACCAAGGAGCCAACAGATTGCGCTCCTGAAGCAATTGAAGATGTATTTATGCCTAGCAGAAGT 
ACTGATCTGGGACAGGGATTCGTTGGTTGGATGAAATCTGGCATCGCGGCCCGTCGCCTGTTCATCAACGAC 
ACCAAGGCTTTGGTGCATACCGTAGACGGGACCGCCATGCTGGTCACGCCAGGAATTTTCAAGCGCTATGTC 
CAAGAGCATCCGGTGCTTGAAAAACTGGCCCAAGCCAAGGAGACGACCGGCTGGAAGCTGGTGCAGCGCGCG 
TTCGAAAAACAGGGGCTTCATCGGAAGACCAGTAAAAACCTGAACATCTGGACCATCAAGGTTTCTGGTCCT 
CGCAAGACGAAAGAGCTCAAGGCCTACCTGCTCCAGGATCCCAAATTGCTGTTCCCTGAGCAGCCTCTGGAC 
AACCCAAGCCTCACGGTCATCACCGATGCCGAAGGAGGTGTGGAATGA