ViewGene

Locus Name:
GeneID:
Location:

GeneID:3829
TrivialName: PA14_25160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25160
PAO1 Ortholog Locus:PA3007
Sequence Length:615
Protein Length:204
Start: 2201454
Stop: 2200840
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06395.1|AE004726_1 (AE004726) repressor protein LexA [Pseudomonas aeruginosa PAO1]
Identities = 204/204 (100%), Positives = 204/204 (100%)
Sequence:
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTT
CCGCCGACCCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAG
GCGCTGGCACGCAAGGGCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAA
CCGCATGCCGCCAACGACGATGAGGGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCC
GAACAGAACATCGAGGAATCCTGCCGGATCAATCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGC
GTGCGCGGCATGAGCATGAAGGACATCGGCATTCTCGACGGCGACCTGCTGGCCGTCCACGTCACCCGCGAA
GCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACGGTGAAACGCTTCAAGCGCGAAGGC
AGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCTGAAGGAGCAGGAACTG
ATCATCGAAGGCTTGAGCGTCGGCGTGATCCGACGCTGA
Translation:
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFE
PHAANDDEGLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTRE
ARNGQVVVARIGEEVTVKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR*
AnnotationID:3836GeneID:3829
AnnotatorUID: diggins
Modification Date/Time: 2005-05-09 12:12:54
Gene Name:lexA
Confidence Code:1
GeneProduct:repressor protein LexA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1974
Secondary Functional Category(ies):transcriptional regulator
EC Number:3.4.21.88
Status:ACTIVE
Pathway:
Homology:
>gb|AAM52308.1|AF502251_1 (AF502251) LexA repressor [Pseudomonas chlororaphis]
          Length = 202

 Score =  358 bits (918), Expect = 1e-98
 Identities = 181/204 (88%), Positives = 193/204 (94%), Gaps = 2/204 (0%)

>gb|AAN67756.1|AE016406_11 (AE016782) LexA repressor [Pseudomonas putida KT2440]
          Length = 202

 Score =  355 bits (911), Expect = 9e-98
 Identities = 179/204 (87%), Positives = 192/204 (94%), Gaps = 2/204 (0%)

>gb|AAN83440.1|AE016770_240 (AE016770) LexA repressor [Escherichia coli CFT073]
          Length = 202

 Score =  252 bits (643), Expect = 1e-66
 Identities = 129/203 (63%), Positives = 158/203 (77%), Gaps = 6/203 (2%)
Structural Features:
COG1974, LexA, SOS-response transcriptional repressors 
(RecA-mediated autopeptidases) 
[Transcription / Signal transduction mechanisms]
CD-Length = 201 residues,  99.0% aligned
Score =  206 bits (526), Expect = 1e-54
Identities = 99/206 (48%), Positives = 125/206 (60%), Gaps = 9/206 (4%)
Genomic Context:
Comment:
ReferenceID:7661
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24803
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36041
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3829_cdd.html
URL:
ReferenceID:36445
Author/Investigator(s): Garriga X, Calero S, Barbe J.
Title: Nucleotide sequence analysis and comparison of the lexA genes from Salmonella typhimurium, Erwinia carotovora, Pseudomonas aeruginosa and Pseudomonas putida.
PubMed: 1494343
MedLine:
Source:
Mol Gen Genet. 1992 Dec;236(1):125-34.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=93156677&dopt=Abstract
Homologs By Global Alignment
Gene ID:3829

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6051 PA3007_tr translation of PA3007 204 99.99 99.99 0 1036.0
168597 gb|AAG06395.1|AE004726_1 (AE004726) repressor protein LexA [Pseudomonas aeruginosa PAO1] 204 99.99 99.99 0 1036.0
168598 emb|CAA44750.1| (X63018) LexA repressor [Pseudomonas aeruginosa] 204 99.99 99.99 0 1036.0
168599 gb|AAM52308.1|AF502251_1 (AF502251) LexA repressor [Pseudomonas chlororaphis] 204 88.72 94.60 2 920.0
168602 gb|AAO56985.1| (AE016868) LexA repressor [Pseudomonas syringae pv. tomato str. DC3000] 204 87.74 94.11 2 910.0
GC ORFID: 46831How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3007Glimmer Score:
Start: 2752473Stop: 2753087
Length: 615
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3007 translation of PA3007Homolog Bit Score 403.0
Other Homologs: psyr_15may02_Scaffold9_revised_gene8140 (ORF: BLASTX 356.0), psyr_15may02_Scaffold7_revised_gene7444 (ORF: BLASTX 155.0), t_PA3007 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTT
CCGCCGACCCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAG
GCGCTGGCACGCAAGGGCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAA
CCGCATGCCGCCAACGACGATGAGGGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCC
GAACAGAACATCGAGGAATCCTGCCGGATCAATCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGC
GTGCGCGGCATGAGCATGAAGGACATCGGCATTCTCGACGGCGACCTGCTGGCCGTCCACGTCACCCGCGAA
GCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACGGTGAAACGCTTCAAGCGCGAAGGC
AGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCTGAAGGAGCAGGAACTG
ATCATCGAAGGCTTGAGCGTCGGCGTGATCCGACGCTGA