ViewGene
Locus Name:
GeneID:
Location:

GeneID:3827
TrivialName: PA14_51350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51350
PAO1 Ortholog Locus:PA1002
Sequence Length:603
Protein Length:200
Start: 4564390
Stop: 4563788
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04391.1|AE004533_2 (AE004533) anthranilate synthase component II [Pseudomonas aeruginosa PAO1]
Identities = 199/200 (99%), Positives = 199/200 (99%)
Sequence:
ATGCGCATCACGCTGTTGGATAACTTCGATTCCTTCACCTACAACCTGGTTGAGCAGTTCTGCCTGCTCGGC
GCGGAGGTCCGGGTGATGCGCAACGATACGCCGTTGCCGACGATCCAGGCGGCATTGCTGGCCGACGGTTGC
GAACTGCTGGTGCTGTCGCCGGGGCCCGGTCGGCCGGAAGACGCCGGCTGCATGCTGGAATTGCTCGCCTGG
GCCCGCGGGCGCTTGCCGGTGCTCGGCGTCTGCCTCGGCCACCAGGCGCTGGCGCTGGCCGCCGGTGGCGCG
GTGGGCGAGGCGAGGAAACCGCTGCATGGCAAGAGCACGTCCCTGCGTTTCGATCAGCATCACCCGCTGTTC
GACGGCATCGCTGACCTGCGCGTCGCGCGCTACCACTCGCTGGTGGTCAGTCGCCTGCCGGAAGGTTTCGAC
TGCCTGGCCGATGCCGATGGTGAGATCATGGCGATGGCCGATCCGCGCAATCGACAGCTGGGCTTGCAGTTC
CATCCCGAGTCGATTCTCACCACCCACGGCCAGCGTCTGCTGGAGAACGCTCTACTCTGGTGCGGCGCGCTG
GCGGTACGCGAGCGCCTTCGGGCCTGA
Translation:
MRITLLDNFDSFTYNLVEQFCLLGAEVRVMRNDTPLPTIQAALLADGCELLVLSPGPGRPEDAGCMLELLAW
ARGRLPVLGVCLGHQALALAAGGAVGEARKPLHGKSTSLRFDQHHPLFDGIADLRVARYHSLVVSRLPEGFD
CLADADGEIMAMADPRNRQLGLQFHPESILTTHGQRLLENALLWCGALAVRERLRA*
AnnotationID:3834GeneID:3827
AnnotatorUID: danlee
Modification Date/Time: 2004-05-14 17:05:48
Gene Name:phnB
Confidence Code:1
GeneProduct:anthranilate synthase component II
Cell Localization:()
Synonyms:PA1002
Cell Localization Confidence Code:5
MolecularFunction:required for PQS synthesis
Functional Category:(21) Quinolone signal response
Alternate Gene Product Name:phenazine biosynthesis protein PhnB 
Functional Category Confidence Code:5
COGs:COG0512, pfam00117
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
PQS synthesis
Homology:






 
Structural Features:
COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II. Score: 231, 5e-62
pfam00117, GATase, Glutamine amidotransferase class-I. Score: 165, 4e-42






   
Genomic Context:
phnA just upstream. PhnB and A known to be cotranscribed. 






   
Comment:


















    ReferenceID:7657




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24799




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32108




  
Author/Investigator(s):
        Essar DW, Eberly L, Hadero A, Crawford IP.





  
Title:
        Identification and characterization of genes for a second anthranilate synthase in Pseudomonas aeruginosa: interchangeability of the two anthranilate synthases and evolutionary implications.





  
PubMed:
        90130326 


MedLine:
        




    
Source:
 J Bacteriol. 1990 Feb;172(2):884-900.






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:32109




  
Author/Investigator(s):
        Gallagher LA, McKnight SL, Kuznetsova MS, Pesci EC, Manoil C.





  
Title:
        Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa.




  
PubMed:
        12426334


MedLine:
        




    
Source:
J Bacteriol. 2002 Dec;184(23):6472-80.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3827
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6048
                           PA1002_tr
                           translation of PA1002
                           200
                           99.50
                           99.50
                           0
                           1036.0
     

     
     
168408
                           gb|AAG04391.1|AE004533_2
                           (AE004533) anthranilate synthase component II [Pseudomonas aeruginosa PAO1]
                           200
                           99.50
                           99.50
                           0
                           1036.0
     

     
     
168409
                           gb|AAA88452.1|
                           (M33811) anthranilate synthase beta subunit [Pseudomonas aeruginosa]
                           200
                           99.00
                           99.00
                           0
                           1030.0
     

     
     
168410
                           gb|AAA88449.1|
                           (M33810) anthranilate synthase beta subunit [Pseudomonas aeruginosa]
                           200
                           99.00
                           99.00
                           0
                           1030.0
     

     
     
168411
                           gb|AAA26018.1|
                           (M15733) trpG [Pseudomonas aeruginosa]
                           200
                           98.50
                           99.50
                           0
                           1029.0
     

     






      

          
GC ORFID: 46829How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1002Glimmer Score: 

          
Start: 389517Stop: 390119

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1002 translation of PA1002Homolog Bit Score 403.0

          
Other Homologs:  t_PA0649 (ORF: BLASTX 142.0), psyr_15may02_Scaffold14_revised_gene2357 (ORF: BLASTX 133.0), t_PA1002 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCATCACGCTGTTGGATAACTTCGATTCCTTCACCTACAACCTGGTTGAGCAGTTCTGCCTGCTCGGC 
GCGGAGGTCCGGGTGATGCGCAACGATACGCCGTTGCCGACGATCCAGGCGGCATTGCTGGCCGACGGTTGC 
GAACTGCTGGTGCTGTCGCCGGGGCCCGGTCGGCCGGAAGACGCCGGCTGCATGCTGGAATTGCTCGCCTGG 
GCCCGCGGGCGCTTGCCGGTGCTCGGCGTCTGCCTCGGCCACCAGGCGCTGGCGCTGGCCGCCGGTGGCGCG 
GTGGGCGAGGCGAGGAAACCGCTGCATGGCAAGAGCACGTCCCTGCGTTTCGATCAGCATCACCCGCTGTTC 
GACGGCATCGCTGACCTGCGCGTCGCGCGCTACCACTCGCTGGTGGTCAGTCGCCTGCCGGAAGGTTTCGAC 
TGCCTGGCCGATGCCGATGGTGAGATCATGGCGATGGCCGATCCGCGCAATCGACAGCTGGGCTTGCAGTTC 
CATCCCGAGTCGATTCTCACCACCCACGGCCAGCGTCTGCTGGAGAACGCTCTACTCTGGTGCGGCGCGCTG 
GCGGTACGCGAGCGCCTTCGGGCCTGA