ViewGene

Locus Name:
GeneID:
Location:

GeneID:3825
TrivialName: PA14_07840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07840
PAO1 Ortholog Locus:PA0601
Sequence Length:633
Protein Length:210
Start: 675575
Stop: 676207
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03990.1|AE004496_6 (AE004496) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 210/210 (100%), Positives = 210/210 (100%)
Sequence:
GTGGTGATCCGAGTCCTGGTCGCTGAAGACCACACGATCGTCAGGGAAGGCATCAAGCAACTGATTGGCATG
GCCAAGGACCTGCAGGTGGTCGGCGAGGCCACCAATGGCGAGCAGTTGCTGGAAACCCTGCGCGGAACGCCT
TGCGAGGTGGTCCTGCTGGATATCTCCATGCCCGGCGTCAATGGCCTCGAGGCGATTCCGCGGATTCGCGCG
CTGAACGAGCCGCCGGCGATCCTGGTGCTGTCGATGCACGACGAGGCGCAGATGGCCGCCCGCGCCCTGAAG
ATAGGTGCTGCCGGCTATGCCACCAAGGACAGCGATCCGGCATTGCTGCTCACCGCGATCCGCAGGGTCGCC
GGCGGCGGACGCTACATCGACCCGGACCTTGCCGATCGGATGGTCTTCGAGGTTGGCCTGACCGATTCGCGT
CCGCCCCATGCGCTGCTCTCCGAGCGCGAGTTCTCGGTGTTCGAGCGGCTGGTGCAGGGCGCCAACGTCAAC
GAGATCGCCCAGCAACTGGCGGTCAGCAACAAGACCATCAGTACCCACAAGGCACGCCTGATGCAGAAGCTC
AACGCGCATTCGGTAGCCGACCTGGTGCGCTACGCGATGGAGCACCGCCTGCTCTGA
Translation:
MVIRVLVAEDHTIVREGIKQLIGMAKDLQVVGEATNGEQLLETLRGTPCEVVLLDISMPGVNGLEAIPRIRA
LNEPPAILVLSMHDEAQMAARALKIGAAGYATKDSDPALLLTAIRRVAGGGRYIDPDLADRMVFEVGLTDSR
PPHALLSEREFSVFERLVQGANVNEIAQQLAVSNKTISTHKARLMQKLNAHSVADLVRYAMEHRLL*
AnnotationID:3832GeneID:3825
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:13
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:uhpA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative DNA-binding response regulator, LuxR family
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54102.1| (AE016857) DNA-binding response regulator, LuxR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 209

 Score =  358 bits (919), Expect = 1e-98
 Identities = 184/209 (88%), Positives = 199/209 (95%)

>gb|AAN66040.1|AE016233_6 (AE016775) DNA-binding response regulator UhpA [Pseudomonas putida
           KT2440]
          Length = 209

 Score =  355 bits (911), Expect = 1e-97
 Identities = 182/209 (87%), Positives = 198/209 (94%)

Structural Features:
COG2197, CitB, Response regulator containing a CheY-like receiver domain 
and an HTH DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  99.1% aligned
Score =  191 bits (487), Expect = 5e-50
Identities = 85/209 (40%), Positives = 132/209 (63%), Gaps = 1/209 (0%)

Genomic Context:
Comment:
ReferenceID:14939
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24795
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33872
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3825_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3825

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6047 PA0601_tr translation of PA0601 210 99.99 99.99 0 1037.0
168383 gb|AAG03990.1|AE004496_6 (AE004496) probable two-component response regulator [Pseudomonas aeruginosa PAO1] 210 99.52 99.99 0 1034.0
168384 gb|AAO54102.1| (AE016857) DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] 210 87.61 94.76 1 919.0
168385 gb|AAN66040.1|AE016233_6 (AE016775) DNA-binding response regulator UhpA [Pseudomonas putida KT2440] 210 86.66 94.28 1 911.0
168391 emb|CAD58346.1| (AL844858) Two-component response regulator [Azoarcus sp. EbN1] 210 49.04 64.28 4 470.0
GC ORFID: 46827How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0601Glimmer Score:
Start: 6476918Stop: 6477550
Length: 633
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0601 translation of PA0601Homolog Bit Score 404.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene5917 (ORF: BLASTX 357.0), t_PA0601 (ORF: GLIMMER)
GC ORF Sequence
GTGGTGATCCGAGTCCTGGTCGCTGAAGACCACACGATCGTCAGGGAAGGCATCAAGCAACTGATTGGCATG
GCCAAGGACCTGCAGGTGGTCGGCGAGGCCACCAATGGCGAGCAGTTGCTGGAAACCCTGCGCGGAACGCCT
TGCGAGGTGGTCCTGCTGGATATCTCCATGCCCGGCGTCAATGGCCTCGAGGCGATTCCGCGGATTCGCGCG
CTGAACGAGCCGCCGGCGATCCTGGTGCTGTCGATGCACGACGAGGCGCAGATGGCCGCCCGCGCCCTGAAG
ATAGGTGCTGCCGGCTATGCCACCAAGGACAGCGATCCGGCATTGCTGCTCACCGCGATCCGCAGGGTCGCC
GGCGGCGGACGCTACATCGACCCGGACCTTGCCGATCGGATGGTCTTCGAGGTTGGCCTGACCGATTCGCGT
CCGCCCCATGCGCTGCTCTCCGAGCGCGAGTTCTCGGTGTTCGAGCGGCTGGTGCAGGGCGCCAACGTCAAC
GAGATCGCCCAGCAACTGGCGGTCAGCAACAAGACCATCAGTACCCACAAGGCACGCCTGATGCAGAAGCTC
AACGCGCATTCGGTAGCCGACCTGGTGCGCTACGCGATGGAGCACCGCCTGCTCTGA