ViewGene
Locus Name:
GeneID:
Location:

GeneID:3824
TrivialName: PA14_69380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69380
PAO1 Ortholog Locus:PA5254
Sequence Length:630
Protein Length:209
Start: 6188440
Stop: 6189069
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08639.1|AE004938_1 (AE004938) probable peptidyl-prolyl cis-trans isomerase, FkbP-type [Pseudomonas aeruginosa PAO1]
Identities = 204/209 (97%), Positives = 204/209 (97%)
Sequence:
ATGCCGCGCCGCCTTTTCATCGGTCTTTTTCTACTGCCGCTGCCGCTTTTCGCCGCGCCCCCCAAGGACGAA
CTGGCCTATGCTGTAGGCGCCCGCCTGGGCACGCGCCTACAGCAGGAAATGCCCGACCTAGAGCTATCCGAA
CTACTTCTCGGACTGCGCCAGGCCTATCGCGGCGAGGCACTTGAAATCCCCCCCGAACGCATCGAACAACTT
CTGCTGCAACACGAGAACGCCACGACGGAAACACCGCGGATCACACCCGCCGAGGCCCGCTTCCTGGCCAAC
GAAAAAGCCCGCTTCGGCGTCCGCGAATTGACCGGCGGCGTCCTCGTCAGCGAATTACGTCGTGGCCAAGGT
AACGGCATCGGCGCGGCAACCCAGGTACACGTCCGTTACCGCGGCCTGCTCGCCGACGGTCAAGTGTTCGAC
CAGAGCGAAAGCGCCGAGTGGTTCGCTCTGGACAGTGTGATAGAGGGATGGCGCACAGCATTGCGAGCGATG
CCTGTCGGCGCGCGCTGGCGAGTGGTGATTCCTTCGACGCAAGCCTATGGCCACGAAGGCGCTGGCGACCTG
ATCCCGCCCGACGCTCCGCTGGTCTTCGAGATCGACCTGCTGGGCGTCCGCTGA
Translation:
MPRRLFIGLFLLPLPLFAAPPKDELAYAVGARLGTRLQQEMPDLELSELLLGLRQAYRGEALEIPPERIEQL
LLQHENATTETPRITPAEARFLANEKARFGVRELTGGVLVSELRRGQGNGIGAATQVHVRYRGLLADGQVFD
QSESAEWFALDSVIEGWRTALRAMPVGARWRVVIPSTQAYGHEGAGDLIPPDAPLVFEIDLLGVR*
AnnotationID:3831GeneID:3824
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 14:02:59
Gene Name:
Confidence Code:3
GeneProduct:putative peptidyl-prolyl cis-trans isomerase, FkbP-type
Cell Localization:()
Synonyms:fkl
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0545
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:5.2.1.8
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65825.1|AE016211_3 (AE016774) peptidyl-prolyl cis-trans isomerase FklB [Pseudomonas
           putida KT2440]
          Length = 220

 Score =  208 bits (529), Expect = 2e-53
 Identities = 109/210 (51%), Positives = 143/210 (68%), Gaps = 2/210 (0%)

>gb|AAO53689.1| (AE016856) peptidyl-prolyl cis-trans isomerase, FKBP-type
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 224

 Score =  204 bits (518), Expect = 4e-52
 Identities = 116/222 (52%), Positives = 146/222 (65%), Gaps = 14/222 (6%)








 
Structural Features:
COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 205 residues,  99.0% aligned
Score =  173 bits (439), Expect = 1e-44
Identities = 66/203 (32%), Positives = 87/203 (42%), Gaps = 8/203 (3%)








   
Genomic Context:






   
Comment:
other possible gene name: fkbZ


















    ReferenceID:7651




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24793




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34827




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3824_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3824
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6046
                           PA5254_tr
                           translation of PA5254
                           209
                           97.60
                           97.60
                           0
                           1039.0
     

     
     
168379
                           gb|AAG08639.1|AE004938_1
                           (AE004938) probable peptidyl-prolyl cis-trans isomerase, FkbP-type [Pseudomonas aeruginosa PAO1]
                           209
                           97.60
                           97.60
                           0
                           1039.0
     

     
     
168380
                           gb|AAA72067.1|
                           (M32077) FKBP-like protein [Pseudomonas aeruginosa]
                           209
                           78.94
                           78.94
                           40
                           842.0
     

     
     
168382
                           gb|AAO53689.1|
                           (AE016856) peptidyl-prolyl cis-trans isomerase, FKBP-type [Pseudomonas syringae pv. tomato str. DC3000]
                           224
                           51.78
                           65.17
                           15
                           530.0
     

     
     
168381
                           gb|AAN65825.1|AE016211_3
                           (AE016774) peptidyl-prolyl cis-trans isomerase FklB [Pseudomonas putida KT2440]
                           221
                           50.67
                           66.06
                           13
                           533.0
     

     






      

          
GC ORFID: 46826How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5254Glimmer Score: 

          
Start: 5452127Stop: 5452756

          
Length: 630


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5254 translation of PA5254Homolog Bit Score 404.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3004 (ORF: BLASTX 196.0), t_PA5254 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCGCCGCCTTTTCATCGGTCTTTTTCTACTGCCGCTGCCGCTTTTCGCCGCGCCCCCCAAGGACGAA 
CTGGCCTATGCTGTAGGCGCCCGCCTGGGCACGCGCCTACAGCAGGAAATGCCCGACCTAGAGCTATCCGAA 
CTACTTCTCGGACTGCGCCAGGCCTATCGCGGCGAGGCACTTGAAATCCCCCCCGAACGCATCGAACAACTT 
CTGCTGCAACACGAGAACGCCACGACGGAAACACCGCGGATCACACCCGCCGAGGCCCGCTTCCTGGCCAAC 
GAAAAAGCCCGCTTCGGCGTCCGCGAATTGACCGGCGGCGTCCTCGTCAGCGAATTACGTCGTGGCCAAGGT 
AACGGCATCGGCGCGGCAACCCAGGTACACGTCCGTTACCGCGGCCTGCTCGCCGACGGTCAAGTGTTCGAC 
CAGAGCGAAAGCGCCGAGTGGTTCGCTCTGGACAGTGTGATAGAGGGATGGCGCACAGCATTGCGAGCGATG 
CCTGTCGGCGCGCGCTGGCGAGTGGTGATTCCTTCGACGCAAGCCTATGGCCACGAAGGCGCTGGCGACCTG 
ATCCCGCCCGACGCTCCGCTGGTCTTCGAGATCGACCTGCTGGGCGTCCGCTGA