ViewGene
Locus Name:
GeneID:
Location:

GeneID:3823
TrivialName: PA14_58500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58500
PAO1 Ortholog Locus:PA4507
Sequence Length:633
Protein Length:210
Start: 5210252
Stop: 5209620
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07895.1|AE004864_7 (AE004864) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 207/210 (98%), Positives = 207/210 (98%)
Sequence:
ATGGACACGAGCGCTTTCCTGATTGCCCTGGCGGTGGTTTACCTGGTCCCCGGACCAGACATGCTCCTGCTG
TTCCAGACCGGCGCCCGCCAGGGCCGTCGCGCGGCGCTGGTCACCGCCCTCGGCCTGGCGCTGGCTCGGGCC
TGCCATGTGCTGATGGCCGCGACCGGGCTGGCGCTGCTGTTCCGTACCGCTCCCTGGACCTTCGACCTGGTG
CGCTTGCTCGGCGCCGCCTACCTCGCCTGGCTTGGCCTGCAGATGCTGCGCGGTGGCGGACTGGCCTTGCCG
ACCAGTGACGTGGGCTCCGCGCCGGTGGTCCCTCACGCCGACCGCCGGGCCTTGCTGCGCGGACTCCTGACC
AACCTGCTGAACCCCAAGGCCCTGCTGTTCTGTTCGGTGCTGCTGCCGCAGTTCGTCAGCCCCGGGGCCGGT
TCGCTGGCCGTCCAGTTCGCCGCGCTCGGTACGGTCCTGGTTCTGGTTGGCCTGGCCTTCGACTGCGCCTAT
GCGCTGGCCGGTGGCCGCCTGGGCCGCTGGCTGGCGTCCCGGCCGCGGGCACAGCGCCTGCAGCAGTGGGGC
TTCGGTGGGTTGTTGATAGGGTTCGGGGTAAGGCTGGCGCTGCTGCGCCAGCTCTGA
Translation:
MDTSAFLIALAVVYLVPGPDMLLLFQTGARQGRRAALVTALGLALARACHVLMAATGLALLFRTAPWTFDLV
RLLGAAYLAWLGLQMLRGGGLALPTSDVGSAPVVPHADRRALLRGLLTNLLNPKALLFCSVLLPQFVSPGAG
SLAVQFAALGTVLVLVGLAFDCAYALAGGRLGRWLASRPRAQRLQQWGFGGLLIGFGVRLALLRQL*
AnnotationID:3830GeneID:3823
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 07:07:07
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4507
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1280,pfam01810
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL46046.1| (AE008957) RhtB family transporter [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 216

 Score =  135 bits (339), Expect = 2e-31
 Identities = 80/201 (39%), Positives = 107/201 (53%), Gaps = 6/201 (2%)

>emb|CAD13946.1| (AL646059) PROBABLE TRANSPORT TRANSMEMBRANE PROTEIN [Ralstonia
           solanacearum]
          Length = 206

 Score =  132 bits (332), Expect = 1e-30
 Identities = 80/204 (39%), Positives = 108/204 (52%), Gaps = 5/204 (2%)






 
Structural Features:
COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]
CD-Length = 208 residues,  96.2% aligned
Score =  119 bits (300), Expect = 5e-28
Identities = 104/204 (50%), Positives = 125/204 (61%), Gaps = 4/204 (1%)

pfam01810, LysE, LysE type translocator.
CD-Length = 191 residues,  96.9% aligned
Score = 87.2 bits (216), Expect = 2e-18
Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 7/192 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7649




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24791




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31551




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3823_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3823
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6045
                           PA4507_tr
                           translation of PA4507
                           210
                           98.57
                           98.57
                           0
                           1038.0
     

     
     
168376
                           gb|AAG07895.1|AE004864_7
                           (AE004864) hypothetical protein PA4507 [Pseudomonas aeruginosa PAO1]
                           210
                           98.57
                           98.57
                           0
                           1038.0
     

     
     
168377
                           gb|AAQ60507.1|
                           (AE016920) probable transporter transmembrane protein [Chromobacterium violaceum ATCC 12472]
                           214
                           45.79
                           58.41
                           13
                           442.0
     

     
     
168378
                           gb|AAQ61702.1|
                           (AE016924) probable amino acid efflux protein [Chromobacterium violaceum ATCC 12472]
                           219
                           41.55
                           50.68
                           19
                           329.0
     

     






      

          
GC ORFID: 46825How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4507Glimmer Score: 

          
Start: 4473930Stop: 4473298

          
Length: 633


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4507 translation of PA4507Homolog Bit Score 404.0

          
Other Homologs:  t_PA4507 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACACGAGCGCTTTCCTGATTGCCCTGGCGGTGGTTTACCTGGTCCCCGGACCAGACATGCTCCTGCTG 
TTCCAGACCGGCGCCCGCCAGGGCCGTCGCGCGGCGCTGGTCACCGCCCTCGGCCTGGCGCTGGCTCGGGCC 
TGCCATGTGCTGATGGCCGCGACCGGGCTGGCGCTGCTGTTCCGTACCGCTCCCTGGACCTTCGACCTGGTG 
CGCTTGCTCGGCGCCGCCTACCTCGCCTGGCTTGGCCTGCAGATGCTGCGCGGTGGCGGACTGGCCTTGCCG 
ACCAGTGACGTGGGCTCCGCGCCGGTGGTCCCTCACGCCGACCGCCGGGCCTTGCTGCGCGGACTCCTGACC 
AACCTGCTGAACCCCAAGGCCCTGCTGTTCTGTTCGGTGCTGCTGCCGCAGTTCGTCAGCCCCGGGGCCGGT 
TCGCTGGCCGTCCAGTTCGCCGCGCTCGGTACGGTCCTGGTTCTGGTTGGCCTGGCCTTCGACTGCGCCTAT 
GCGCTGGCCGGTGGCCGCCTGGGCCGCTGGCTGGCGTCCCGGCCGCGGGCACAGCGCCTGCAGCAGTGGGGC 
TTCGGTGGGTTGTTGATAGGGTTCGGGGTAAGGCTGGCGCTGCTGCGCCAGCTCTGA