ViewGene
Locus Name:
GeneID:
Location:

GeneID:3822
TrivialName: PA14_12890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12890
PAO1 Ortholog Locus:PA3941
Sequence Length:597
Protein Length:198
Start: 1105701
Stop: 1106297
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07328.1|AE004812_3 (AE004812) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 196/198 (98%), Positives = 197/198 (99%)
Sequence:
GTGAGGCTGGCCGACATCCGCCACTGGGTGTTCGACATGGACGGCACCCTGACCCGGGCCGTGCACGACTTC
CCGGCGATCCGCCGAGCGCTGGACATCCCCGAGCAGGACGACATCCTGCTGCACCTCGCCGCCCTGCCCGAG
GCTGAGGCGGCGGCCAAGCACGCCTGGCTGCTCGAACACGAGCGCGCCCTGGCCGAGGCCGCGCGGCCGGCG
CCGGGCGCACTGGAACTGGTGCGCGAGTTGCAGCGGCGCAGCGTGCGCCTGGGCATCCTGACCCGCAACGAC
CACCAGTTGGCGCTGATCACCCTCGAAGCGATCGGCCTGGGCGGCTGCTTCCCCACCGAGCACATCCTCGGG
CGCGGCGAGGCGCGGCCCAAGCCGGACCCTGATGGCTTGCTGCGCATCGCCCGACGCTGGAACGTGACGCCG
GCGGAGCTGGTGATGGTCGGCGACTACCGTTTCGACCTCGACTGCGGACGCGCCGCGGGTAGTCGCACGGTG
CTGGTCAACCTGCCGGAAAACCCCTGGCCGGAGCTGGCCGACTGGCACGCTGCCGATTGCCATGCGTTGCTC
GAGCAACTGCAAACGCCGTAG
Translation:
MRLADIRHWVFDMDGTLTRAVHDFPAIRRALDIPEQDDILLHLAALPEAEAAAKHAWLLEHERALAEAARPA
PGALELVRELQRRSVRLGILTRNDHQLALITLEAIGLGGCFPTEHILGRGEARPKPDPDGLLRIARRWNVTP
AELVMVGDYRFDLDCGRAAGSRTVLVNLPENPWPELADWHAADCHALLEQLQTP*
AnnotationID:3829GeneID:3822
AnnotatorUID: urbach
Modification Date/Time: 2004-05-20 19:07:33
Gene Name:
Confidence Code:3
GeneProduct:possible phosphatase/hydrolase
Cell Localization:()
Synonyms:PA3941
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0546, COG0637, pfam00702
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG07328.1|AE004812_3 (AE004812) hypothetical protein
[Pseudomonas aeruginosa PAO1] Length = 198






 
Structural Features:
gnl|CDD|10417 COG0546, Gph, Predicted phosphatases
[General function prediction only] Length = 220






   
Genomic Context:






   
Comment:


















    ReferenceID:14937




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24789




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3822
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6044
                           PA3941_tr
                           translation of PA3941
                           198
                           98.98
                           99.49
                           0
                           1037.0
     

     
     
168370
                           gb|AAG07328.1|AE004812_3
                           (AE004812) hypothetical protein PA3941 [Pseudomonas aeruginosa PAO1]
                           198
                           98.48
                           99.49
                           0
                           1034.0
     

     
     
168371
                           gb|AAN70331.1|AE016675_1
                           (AE016791) hydrolase, haloacid dehalogenase-like family [Pseudomonas putida KT2440]
                           198
                           73.73
                           80.30
                           2
                           759.0
     

     
     
168372
                           gb|AAO58105.1|
                           (AE016872) HAD-superfamily hydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           198
                           63.13
                           70.70
                           14
                           645.0
     

     
     
168373
                           gb|AAM35536.1|
                           (AE011693) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           198
                           62.62
                           70.20
                           3
                           621.0
     

     






      

          
GC ORFID: 46824How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3941Glimmer Score: 

          
Start: 3848237Stop: 3847641

          
Length: 597


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3941 translation of PA3941Homolog Bit Score 404.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5386 (ORF: BLASTX 275.0), t_PA3941 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGGCTGGCCGACATCCGCCACTGGGTGTTCGACATGGACGGCACCCTGACCCGGGCCGTGCACGACTTC 
CCGGCGATCCGCCGAGCGCTGGACATCCCCGAGCAGGACGACATCCTGCTGCACCTCGCCGCCCTGCCCGAG 
GCTGAGGCGGCGGCCAAGCACGCCTGGCTGCTCGAACACGAGCGCGCCCTGGCCGAGGCCGCGCGGCCGGCG 
CCGGGCGCACTGGAACTGGTGCGCGAGTTGCAGCGGCGCAGCGTGCGCCTGGGCATCCTGACCCGCAACGAC 
CACCAGTTGGCGCTGATCACCCTCGAAGCGATCGGCCTGGGCGGCTGCTTCCCCACCGAGCACATCCTCGGG 
CGCGGCGAGGCGCGGCCCAAGCCGGACCCTGATGGCTTGCTGCGCATCGCCCGACGCTGGAACGTGACGCCG 
GCGGAGCTGGTGATGGTCGGCGACTACCGTTTCGACCTCGACTGCGGACGCGCCGCGGGTAGTCGCACGGTG 
CTGGTCAACCTGCCGGAAAACCCCTGGCCGGAGCTGGCCGACTGGCACGCTGCCGATTGCCATGCGTTGCTC 
GAGCAACTGCAAACGCCGTAG