ViewGene
Locus Name:
GeneID:
Location:

GeneID:3821
TrivialName: PA14_15140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15140
PAO1 Ortholog Locus:PA3783
Sequence Length:630
Protein Length:209
Start: 1284065
Stop: 1283436
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07170.1|AE004797_5 (AE004797) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 205/209 (98%), Positives = 206/209 (98%)
Sequence:
ATGTCCACACGTCAACCCAAACGCGCCTTGCTGGTCATCGACGTACAGAACGAATACGTCAGCGGCAACCTG
CGTATCGAATTTCCCGCCATCCAATCGTCGCTGGAACGTATCGGCGCCGCCATGGATGCCGCCTACGCGGCG
GGCATCCCGATCGTCGTGGTGCAGCACCTGGCGCCGGCGGACTCGCCGTTGTTCGCGCGCGGCAGCCGGCAG
GCCGAGCTGCACGAGGTGGTCGCCTCGCGGCCCTACCAGCGCAAGGTGGAAAAGCAACTGGCCAGTTCCTTC
GTCGGCACCGGGCTGGCCGACTGGCTGCGCGAACGCGACATCGACACCCTCGCCGTGGTCGGCTACATGACC
CAGCACTGCGACGACTCGACCATCCGCCAGGCGATCCACGAAGGCTGGCAAGTGGAATACCTGCACGACGCC
AGCGGCTCGGTGCCCTACCGCAACCGCGCCGGCCAGGCCAGCGCGGAAGAGATCCACCGGATCTTCGGCATC
GTCCTGCAGTCCTCCTTCGCCGCCGTGCTCAGCACCGAGGAATGGCTGGAAAGCCTCGCCGGCCGGCACGTT
CCGGAACGCGACAACATCTACGACTCCAACCAGCGGGCCCTGGCCAACCGCTGA
Translation:
MSTRQPKRALLVIDVQNEYVSGNLRIEFPAIQSSLERIGAAMDAAYAAGIPIVVVQHLAPADSPLFARGSRQ
AELHEVVASRPYQRKVEKQLASSFVGTGLADWLRERDIDTLAVVGYMTQHCDDSTIRQAIHEGWQVEYLHDA
SGSVPYRNRAGQASAEEIHRIFGIVLQSSFAAVLSTEEWLESLAGRHVPERDNIYDSNQRALANR*
AnnotationID:3828GeneID:3821
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 21:09:23
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3783
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1335,pfam00857
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1335, PncA, Amidases related to nicotinamidase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 205 residues,  98.0% aligned
Score =  101 bits (253), Expect = 1e-22
Identities = 59/201 (29%), Positives = 85/201 (42%), Gaps = 25/201 (12%)

pfam00857, Isochorismatase, Isochorismatase family. This family 
are hydrolase enzymes.
CD-Length = 183 residues,  98.4% aligned
Score = 74.1 bits (182), Expect = 2e-14
Identities = 53/191 (27%), Positives = 75/191 (39%), Gaps = 22/191 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7645




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24787




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31771




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3821_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3821
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6043
                           PA3783_tr
                           translation of PA3783
                           209
                           98.08
                           98.56
                           0
                           1039.0
     

     
     
168366
                           gb|AAG07170.1|AE004797_5
                           (AE004797) hypothetical protein PA3783 [Pseudomonas aeruginosa PAO1]
                           209
                           98.08
                           98.56
                           0
                           1039.0
     

     
     
168367
                           dbj|BAB49813.1|
                           (AP003000) hypothetical protein [Mesorhizobium loti]
                           214
                           57.00
                           68.22
                           5
                           589.0
     

     
     
168368
                           gb|AAR33900.1|
                           (AE017208) isochorismatase family protein [Geobacter sulfurreducens PCA]
                           210
                           44.76
                           55.71
                           29
                           433.0
     

     
     
168369
                           emb|CAD78779.1|
                           (BX294151) conserved hypothetical protein-putative hydrolase [Pirellula sp.] [Pirellula sp. 1]
                           210
                           36.66
                           50.00
                           30
                           359.0
     

     






      

          
GC ORFID: 46823How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3783Glimmer Score: 

          
Start: 3669872Stop: 3670501

          
Length: 630


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3783 translation of PA3783Homolog Bit Score 404.0

          
Other Homologs:  t_PA3783 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCACACGTCAACCCAAACGCGCCTTGCTGGTCATCGACGTACAGAACGAATACGTCAGCGGCAACCTG 
CGTATCGAATTTCCCGCCATCCAATCGTCGCTGGAACGTATCGGCGCCGCCATGGATGCCGCCTACGCGGCG 
GGCATCCCGATCGTCGTGGTGCAGCACCTGGCGCCGGCGGACTCGCCGTTGTTCGCGCGCGGCAGCCGGCAG 
GCCGAGCTGCACGAGGTGGTCGCCTCGCGGCCCTACCAGCGCAAGGTGGAAAAGCAACTGGCCAGTTCCTTC 
GTCGGCACCGGGCTGGCCGACTGGCTGCGCGAACGCGACATCGACACCCTCGCCGTGGTCGGCTACATGACC 
CAGCACTGCGACGACTCGACCATCCGCCAGGCGATCCACGAAGGCTGGCAAGTGGAATACCTGCACGACGCC 
AGCGGCTCGGTGCCCTACCGCAACCGCGCCGGCCAGGCCAGCGCGGAAGAGATCCACCGGATCTTCGGCATC 
GTCCTGCAGTCCTCCTTCGCCGCCGTGCTCAGCACCGAGGAATGGCTGGAAAGCCTCGCCGGCCGGCACGTT 
CCGGAACGCGACAACATCTACGACTCCAACCAGCGGGCCCTGGCCAACCGCTGA