ViewGene
Locus Name:
GeneID:
Location:

GeneID:3820
TrivialName: PA14_18690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18690
PAO1 Ortholog Locus:PA3529
Sequence Length:603
Protein Length:200
Start: 1608543
Stop: 1609145
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06917.1|AE004773_6 (AE004773) probable peroxidase [Pseudomonas aeruginosa PAO1]
Identities = 200/200 (100%), Positives = 200/200 (100%)
Sequence:
ATGAGCGTACTCGTAGGTAAGAAAGCGCCTGACTTCAACGTTGCCGCGGTACTGGGCAATGGCGAGATCGTC
GAGAGCTTCACCCTGTCCGAGGCCATCAAGGGCAAGTACGGCCTGGTGTTCTTCTATCCGCTGGACTTCACC
TTCGTCTGCCCGTCCGAGCTGATCGCCCTGGACCACCGCATCCCGGAATTCCAGGCGCGCAACGTCGAGGTG
ATCGGCGTTTCCATCGACTCCCACTTCACCCACAACGCCTGGCGCAACACCCCGGTGGACAAGGGCGGCATC
GGCGCCGTCAAGTACACCCTGGCGGCCGACACCAAGCACGAGATCGCCAAGGCCTATGACGTCGAGTCCGAC
GGTGGCGTGGCCTTCCGTGGCGCGTTCCTGATCGACAAGGAAGGCGTTGTGCGCTCGCAGATCGTCAACGAC
CTGCCGCTGGGCCGCAACATGGACGAGCTGCTGCGTCTGGTCGATGCCCTGCAGTTCCATGAGGAGCACGGC
GAAGTCTGCCCGGCCAACTGGAAGAAGGGCGACAAGGGCATGACCGCATCGCCCGAAGGCGTGGCCAAGTAC
CTGGCCGAGAACGCCAGCAAGCTGTAA
Translation:
MSVLVGKKAPDFNVAAVLGNGEIVESFTLSEAIKGKYGLVFFYPLDFTFVCPSELIALDHRIPEFQARNVEV
IGVSIDSHFTHNAWRNTPVDKGGIGAVKYTLAADTKHEIAKAYDVESDGGVAFRGAFLIDKEGVVRSQIVND
LPLGRNMDELLRLVDALQFHEEHGEVCPANWKKGDKGMTASPEGVAKYLAENASKL*
AnnotationID:3827GeneID:3820
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 16:04:07
Gene Name:
Confidence Code:3
GeneProduct:putative alkyl hydroperoxide reductase subunit
Cell Localization:()
Synonyms:ahpC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative peroxynitrite reductase
Functional Category Confidence Code:5
COGs:pfam00578,COG0450
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66709.1|AE016299_5 (AE016778) antioxidant, AhpC/Tsa family [Pseudomonas putida KT2440]
          Length = 200

 Score =  365 bits (937), Expect = e-101
 Identities = 179/200 (89%), Positives = 186/200 (93%)

>gb|AAA74933.1| (L46863) alkylhydrogenperoxide reductase [Legionella pneumophila]
          Length = 201

 Score =  301 bits (772), Expect = 1e-81
 Identities = 145/201 (72%), Positives = 171/201 (85%), Gaps = 1/201 (0%)







 
Structural Features:
pfam00578, AhpC-TSA, AhpC/TSA family. This family contains proteins related to 
alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA).
CD-Length = 145 residues, 100.0% aligned
Score =  156 bits (397), Expect = 1e-39
Identities = 70/153 (45%), Positives = 94/153 (61%), Gaps = 9/153 (5%)

COG0450, AhpC, Peroxiredoxin 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 194 residues, 100.0% aligned
Score =  267 bits (683), Expect = 9e-73
Identities = 112/197 (56%), Positives = 141/197 (71%), Gaps = 4/197 (2%)






   
Genomic Context:






   
Comment:
other possible gene name: tsaA


















    ReferenceID:7643




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24785




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32034




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3820_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3820
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6041
                           PA3529_tr
                           translation of PA3529
                           200
                           99.99
                           99.99
                           0
                           1038.0
     

     
     
168267
                           gb|AAG06917.1|AE004773_6
                           (AE004773) probable peroxidase [Pseudomonas aeruginosa PAO1]
                           200
                           99.99
                           99.99
                           0
                           1038.0
     

     
     
168268
                           gb|AAN66709.1|AE016299_5
                           (AE016778) antioxidant, AhpC/Tsa family [Pseudomonas putida KT2440]
                           200
                           89.50
                           93.00
                           0
                           937.0
     

     
     
168269
                           gb|AAO91201.1|
                           (AE016965) antioxidant, AhpC/Tsa family [Coxiella burnetii RSA 493]
                           200
                           76.50
                           85.50
                           0
                           802.0
     

     
     
168271
                           gb|AAM00601.1|
                           (AF480906) peroxynitrite reductase [Legionella pneumophila]
                           201
                           72.63
                           85.57
                           1
                           779.0
     

     






      

          
GC ORFID: 46822How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3529Glimmer Score: 

          
Start: 3345391Stop: 3344789

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3529 translation of PA3529Homolog Bit Score 404.0

          
Other Homologs:  t_PA0848 (ORF: BLASTX 277.0), psyr_15may02_Scaffold7_revised_gene7275 (ORF: BLASTX 134.0), t_PA3529 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGTACTCGTAGGTAAGAAAGCGCCTGACTTCAACGTTGCCGCGGTACTGGGCAATGGCGAGATCGTC 
GAGAGCTTCACCCTGTCCGAGGCCATCAAGGGCAAGTACGGCCTGGTGTTCTTCTATCCGCTGGACTTCACC 
TTCGTCTGCCCGTCCGAGCTGATCGCCCTGGACCACCGCATCCCGGAATTCCAGGCGCGCAACGTCGAGGTG 
ATCGGCGTTTCCATCGACTCCCACTTCACCCACAACGCCTGGCGCAACACCCCGGTGGACAAGGGCGGCATC 
GGCGCCGTCAAGTACACCCTGGCGGCCGACACCAAGCACGAGATCGCCAAGGCCTATGACGTCGAGTCCGAC 
GGTGGCGTGGCCTTCCGTGGCGCGTTCCTGATCGACAAGGAAGGCGTTGTGCGCTCGCAGATCGTCAACGAC 
CTGCCGCTGGGCCGCAACATGGACGAGCTGCTGCGTCTGGTCGATGCCCTGCAGTTCCATGAGGAGCACGGC 
GAAGTCTGCCCGGCCAACTGGAAGAAGGGCGACAAGGGCATGACCGCATCGCCCGAAGGCGTGGCCAAGTAC 
CTGGCCGAGAACGCCAGCAAGCTGTAA