ViewGene
Locus Name:
GeneID:
Location:

GeneID:3817
TrivialName: PA14_30440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30440
PAO1 Ortholog Locus:PA2602
Sequence Length:606
Protein Length:201
Start: 2636647
Stop: 2636042
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05990.1|AE004689_2 (AE004689) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 198/201 (98%), Positives = 198/201 (98%)
Sequence:
ATGTCATCCATCCTGCGCCTCGACCGCCTGCGCCAGTTCATCGGCGAGCTGGCGACACTGCTCGACAGCCGT
CCCGACGAATCCACCCTGCTCACCCAAGCCCCCCCCCTGCTGGCCGAGCTGGTGCGCCAGGACGACTGGCTG
CCGGAAGACTGCGCCCGCCCCGATCCACAGCGCTACCAACAGTACCTGCTGCATGTCGACTCACGGCAGCGC
TTCTCGGTGGTCAGCTTCGTCTGGGGGCCGGGCCAGATCACACCGGTACACGATCATCGGGTCTGGGGCCTG
ATCGGCATGCTCCGCGGGGCCGAATACTCGCAGCCGTACGCCTTCGATGCGGGGGGGCGTCCGCATCCCAGC
GGAGCCCGTCGACGCCTGGAGCCCGGCGAGGTCGAAGCGCTGTCGCCACGCATTGGCGACGTGCACCAGGTG
AGCAACGCCTTCAGCGACCGCACATCCATCAGTATCCACGTCTACGGCGCCAATATCGGTGCGGTACGGCGT
GCCGTGTTCAGCGCCGAAGGTGAGGAAAAACCCTTCATTTCCGGCTATTCCAACAGCCGCTTGCCCAATATC
TGGGACCTGTCGAAAGAGAACCCCGCATGA
Translation:
MSSILRLDRLRQFIGELATLLDSRPDESTLLTQAPPLLAELVRQDDWLPEDCARPDPQRYQQYLLHVDSRQR
FSVVSFVWGPGQITPVHDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQV
SNAFSDRTSISIHVYGANIGAVRRAVFSAEGEEKPFISGYSNSRLPNIWDLSKENPA*
AnnotationID:3824GeneID:3817
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 11:11:20
Gene Name:
Confidence Code:3
GeneProduct:putative enzyme
Cell Localization:()
Synonyms:PA2602
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5553
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5553, COG5553, Predicted metal-dependent enzyme of the double-stranded 
beta helix superfamily
CD-Length = 191 residues, 100.0% aligned
Score =  270 bits (690), Expect = 1e-73
Identities = 69/195 (35%), Positives = 97/195 (49%), Gaps = 4/195 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7637




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24779




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33153




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3817_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3817
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6038
                           PA2602_tr
                           translation of PA2602
                           201
                           98.50
                           98.50
                           0
                           1039.0
     

     
     
168133
                           gb|AAG05990.1|AE004689_2
                           (AE004689) hypothetical protein PA2602 [Pseudomonas aeruginosa PAO1]
                           201
                           98.50
                           98.50
                           0
                           1039.0
     

     
     
168134
                           gb|AAN68823.1|AE016515_2
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           202
                           71.28
                           81.18
                           1
                           763.0
     

     
     
168135
                           gb|AAO55313.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           206
                           58.25
                           69.41
                           7
                           596.0
     

     
     
168136
                           emb|CAE34937.1|
                           (BX640450) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           203
                           50.73
                           66.00
                           9
                           537.0
     

     






      

          
GC ORFID: 46819How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2602Glimmer Score: 

          
Start: 2317279Stop: 2317884

          
Length: 606


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2602 translation of PA2602Homolog Bit Score 404.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7655 (ORF: BLASTX 232.0), t_PA2602 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCATCCATCCTGCGCCTCGACCGCCTGCGCCAGTTCATCGGCGAGCTGGCGACACTGCTCGACAGCCGT 
CCCGACGAATCCACCCTGCTCACCCAAGCCCCCCCCCTGCTGGCCGAGCTGGTGCGCCAGGACGACTGGCTG 
CCGGAAGACTGCGCCCGCCCCGATCCACAGCGCTACCAACAGTACCTGCTGCATGTCGACTCACGGCAGCGC 
TTCTCGGTGGTCAGCTTCGTCTGGGGGCCGGGCCAGATCACACCGGTACACGATCATCGGGTCTGGGGCCTG 
ATCGGCATGCTCCGCGGGGCCGAATACTCGCAGCCGTACGCCTTCGATGCGGGGGGGCGTCCGCATCCCAGC 
GGAGCCCGTCGACGCCTGGAGCCCGGCGAGGTCGAAGCGCTGTCGCCACGCATTGGCGACGTGCACCAGGTG 
AGCAACGCCTTCAGCGACCGCACATCCATCAGTATCCACGTCTACGGCGCCAATATCGGTGCGGTACGGCGT 
GCCGTGTTCAGCGCCGAAGGTGAGGAAAAACCCTTCATTTCCGGCTATTCCAACAGCCGCTTGCCCAATATC 
TGGGACCTGTCGAAAGAGAACCCCGCATGA