ViewGene
Locus Name:
GeneID:
Location:

GeneID:3816
TrivialName: PA14_53160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53160
PAO1 Ortholog Locus:PA0859
Sequence Length:603
Protein Length:200
Start: 4714166
Stop: 4713564
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04248.1|AE004520_11 (AE004520) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 197/200 (98%), Positives = 199/200 (99%)
Sequence:
ATGTGTTCCTGGTGCTGGGGCTTCGCCCCGGTCGCCGAGGCGCTGTCCCGGCAGGCGGCCGCCGACGGCGTC
GCTTTCCACCTGGTAGCCGGTGGCCTGCGCGCCGGCCACGGCGCGGCGCTCGACCCGAATACCCGCGGCTAC
ATCCTCGGCCACTGGCAGACCGTGCAGCAGACCACCGGCCAGCCGTTCCGCTTCGACGACGCGTTGCCCGAA
GGCTTCGTCTATGACACCGAGCCGGCCTGCCGGGCCCTGGTGGCGGCGCGCAGCCTCGACGAGGAAAGCGCC
TGGCCGCTGGTGAGGGCGATCCAGCGGGCGTTCTACGCCGAGGGTCGCGATGTCACCCAGGCGGCGGTGCTC
GCCGACCTGGCGGAAGCGGTGGGAATTCCACGCATCGAGTTCGCCGCGGCCTTCGACAGCGGCGAGGCGCGT
GACGCCACCGCCGCCGATTTCGCCTGGGTCCAGGATCTTGGCATCGCCGGGTTCCCGACCCTGCTGGCCGAG
CGCAACGGCCAACTGGCGTTGCTCACCAACGGCTACCAGCCGCTTGCCGAACTTTCACCCTTGCTCGGCCGC
TGGCTGGAACGGGGCCGGCATGAGTGA
Translation:
MCSWCWGFAPVAEALSRQAAADGVAFHLVAGGLRAGHGAALDPNTRGYILGHWQTVQQTTGQPFRFDDALPE
GFVYDTEPACRALVAARSLDEESAWPLVRAIQRAFYAEGRDVTQAAVLADLAEAVGIPRIEFAAAFDSGEAR
DATAADFAWVQDLGIAGFPTLLAERNGQLALLTNGYQPLAELSPLLGRWLERGRHE*
AnnotationID:3823GeneID:3816
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 18:06:16
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0859
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3531
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3531, Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
      CD-Length = 212 residues,  95.3% aligned
      Score =  215 bits (548), Expect = 7e-57






   
Genomic Context:






   
Comment:


















    ReferenceID:7635




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24777




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3816
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6037
                           PA0859_tr
                           translation of PA0859
                           200
                           98.50
                           99.50
                           0
                           1039.0
     

     
     
168127
                           gb|AAG04248.1|AE004520_11
                           (AE004520) hypothetical protein PA0859 [Pseudomonas aeruginosa PAO1]
                           200
                           98.50
                           99.50
                           0
                           1039.0
     

     
     
168128
                           emb|CAD42122.1|
                           (AJ243174) hypothetical protein [Pseudomonas fluorescens]
                           200
                           73.00
                           81.00
                           0
                           774.0
     

     
     
168129
                           gb|AAO55255.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           211
                           67.29
                           73.45
                           12
                           721.0
     

     
     
168130
                           gb|AAN67379.1|AE016364_4
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           200
                           67.00
                           73.00
                           1
                           687.0
     

     






      

          
GC ORFID: 46818How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0859Glimmer Score: 

          
Start: 239741Stop: 240343

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0859 translation of PA0859Homolog Bit Score 404.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7721 (ORF: BLASTX 293.0), t_PA0859 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGTTCCTGGTGCTGGGGCTTCGCCCCGGTCGCCGAGGCGCTGTCCCGGCAGGCGGCCGCCGACGGCGTC 
GCTTTCCACCTGGTAGCCGGTGGCCTGCGCGCCGGCCACGGCGCGGCGCTCGACCCGAATACCCGCGGCTAC 
ATCCTCGGCCACTGGCAGACCGTGCAGCAGACCACCGGCCAGCCGTTCCGCTTCGACGACGCGTTGCCCGAA 
GGCTTCGTCTATGACACCGAGCCGGCCTGCCGGGCCCTGGTGGCGGCGCGCAGCCTCGACGAGGAAAGCGCC 
TGGCCGCTGGTGAGGGCGATCCAGCGGGCGTTCTACGCCGAGGGTCGCGATGTCACCCAGGCGGCGGTGCTC 
GCCGACCTGGCGGAAGCGGTGGGAATTCCACGCATCGAGTTCGCCGCGGCCTTCGACAGCGGCGAGGCGCGT 
GACGCCACCGCCGCCGATTTCGCCTGGGTCCAGGATCTTGGCATCGCCGGGTTCCCGACCCTGCTGGCCGAG 
CGCAACGGCCAACTGGCGTTGCTCACCAACGGCTACCAGCCGCTTGCCGAACTTTCACCCTTGCTCGGCCGC 
TGGCTGGAACGGGGCCGGCATGAGTGA