ViewGene
Locus Name:
GeneID:
Location:

GeneID:3815
TrivialName: PA14_64940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64940
PAO1 Ortholog Locus:PA4917
Sequence Length:603
Protein Length:200
Start: 5789079
Stop: 5788477
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08302.1|AE004904_10 (AE004904) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 198/199 (99%), Positives = 199/199 (100%)
Sequence:
ATGCGTGATGAAATAAGTTCCCGGATTCGCCGACTGCCTGCCGGGATGAGCGGCGGACGCGCCCCCGACTTC
GCTCTCGCGGTCTATGGTGGGGCGTTCGACCCGCCGCACCCCGGCCATGAGTCGGTGATCCGCCGGGCGCTG
CTTTGCGCCGAACGGGTCGCCCTGGTGCCGAGCCACCGCCACGCCTTCGGCAAGCGCATGGGCGATTTCGAG
CTGCGCTGCCGCTGGCTGGCGCGGCTGGCCCGGCGGATCGATCCGCGGCGGGTGTATTGCGAGCCGATCGAA
GCAGGATTGATGCCCGATCGTCCGGCGGTCTACAGCATCGACCTGCTGGAAGCGCTGGCCGCGCGTAGCGGC
CTGGCGTCAGCGCGGATCGCCCTGCTGATCGGCGCCGACAACGAGGCGGAGCTGCCGCGCTTCGAACGCGCC
GCCGAATTGTGCTGGCGCTTCGGCCGGCTGGTGGCGGAGGAGCGGCTGCCGCTGCACAGCTCGATGATCCGC
CAGCGCCTGCGCGAAGGACTGGCGATACCGGAGGCCTGGTGCCTGCCGGAAGTGAAGGACGAACTGCACTGC
TATGGCGGCGAACGCCAGGCGGGCTGA
Translation:
MRDEISSRIRRLPAGMSGGRAPDFALAVYGGAFDPPHPGHESVIRRALLCAERVALVPSHRHAFGKRMGDFE
LRCRWLARLARRIDPRRVYCEPIEAGLMPDRPAVYSIDLLEALAARSGLASARIALLIGADNEAELPRFERA
AELCWRFGRLVAEERLPLHSSMIRQRLREGLAIPEAWCLPEVKDELHCYGGERQAG*
AnnotationID:3822GeneID:3815
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 11:11:51
Gene Name:
Confidence Code:3
GeneProduct:putative icotinic acid mononucleotide adenylyltransferase
Cell Localization:()
Synonyms:PA4917
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1057
Secondary Functional Category(ies):coenzyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase 
[Coenzyme metabolism]
CD-Length = 197 residues,  98.0% aligned
Score =  114 bits (287), Expect = 7e-27
Identities = 52/204 (25%), Positives = 75/204 (36%), Gaps = 38/204 (18%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7633




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24775




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35136




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3815_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3815
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6036
                           PA4917_tr
                           translation of PA4917
                           200
                           99.00
                           99.50
                           0
                           1039.0
     

     
     
168126
                           gb|AAG08302.1|AE004904_10
                           (AE004904) hypothetical protein PA4917 [Pseudomonas aeruginosa PAO1]
                           200
                           99.00
                           99.50
                           0
                           1039.0
     

     






      

          
GC ORFID: 46817How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4917Glimmer Score: 

          
Start: 5052760Stop: 5052158

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4917 translation of PA4917Homolog Bit Score 405.0

          
Other Homologs:  t_PA4917 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGATGAAATAAGTTCCCGGATTCGCCGACTGCCTGCCGGGATGAGCGGCGGACGCGCCCCCGACTTC 
GCTCTCGCGGTCTATGGTGGGGCGTTCGACCCGCCGCACCCCGGCCATGAGTCGGTGATCCGCCGGGCGCTG 
CTTTGCGCCGAACGGGTCGCCCTGGTGCCGAGCCACCGCCACGCCTTCGGCAAGCGCATGGGCGATTTCGAG 
CTGCGCTGCCGCTGGCTGGCGCGGCTGGCCCGGCGGATCGATCCGCGGCGGGTGTATTGCGAGCCGATCGAA 
GCAGGATTGATGCCCGATCGTCCGGCGGTCTACAGCATCGACCTGCTGGAAGCGCTGGCCGCGCGTAGCGGC 
CTGGCGTCAGCGCGGATCGCCCTGCTGATCGGCGCCGACAACGAGGCGGAGCTGCCGCGCTTCGAACGCGCC 
GCCGAATTGTGCTGGCGCTTCGGCCGGCTGGTGGCGGAGGAGCGGCTGCCGCTGCACAGCTCGATGATCCGC 
CAGCGCCTGCGCGAAGGACTGGCGATACCGGAGGCCTGGTGCCTGCCGGAAGTGAAGGACGAACTGCACTGC 
TATGGCGGCGAACGCCAGGCGGGCTGA