ViewGene

Locus Name:
GeneID:
Location:

GeneID:3814
TrivialName: PA14_64560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64560
PAO1 Ortholog Locus:PA4884
Sequence Length:624
Protein Length:207
Start: 5751670
Stop: 5751047
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08269.1|AE004901_11 (AE004901) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 207/207 (100%), Positives = 207/207 (100%)
Sequence:
ATGCTTCGACTCAAGGCTTCCCCCGCGCTGCTCTTCGGCCTGCTCCTGGCCAGTGCCGCCAGCTTCGCCGCG
CAACCACCTGCGGGCATGCTGCAGCCGCTGCGCGGCACCATCCAGCAGGCCGCCGACGACCACCTGCAACTG
AAGGCCCGCAACGGCCAGCAACTGACGGTCAGGCTCACCGACAAGACCGCGATCCGCGCCGTGTCGCTGGCG
AAGCCGGAGGACATCCAGCCCGACAGCTTCATCGGTACCGCCGCCGTGCCGCAGCCCGACGGCACCCTGAAG
GCCCTCGAGGTGCATGTCTTCGCCCCCAGCCTGCGCGGCAGCGGCGAAGGCCACCGGCCCTGGGAGAACGCC
GATGGCAGCGCCTCGACCATGACCAACGGTACGGTCGGCAACCTGGTGGTCAGCCAGGGCCGGCGCATGACG
GTGAAATACGGCGATGGCGAGAAGACCGTGGTGGTGCCGGACGACGTGCCCATCGTCAGCCTGGAGCCGGGC
GAGCGCAGCCTGCTCAAGCCTGGCGCCAAGGTCGTGCTGTTCCCGCAGAAGGGCGCCGACGGCAGCCTCACC
GCCCTGGCCATCTCGGTCGGCAAGGACGGCGTGACCCCGCCGATGTGA
Translation:
MLRLKASPALLFGLLLASAASFAAQPPAGMLQPLRGTIQQAADDHLQLKARNGQQLTVRLTDKTAIRAVSLA
KPEDIQPDSFIGTAAVPQPDGTLKALEVHVFAPSLRGSGEGHRPWENADGSASTMTNGTVGNLVVSQGRRMT
VKYGDGEKTVVVPDDVPIVSLEPGERSLLKPGAKVVLFPQKGADGSLTALAISVGKDGVTPPM*
AnnotationID:3821GeneID:3814
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4884
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7631
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24773
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3814

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6035 PA4884_tr translation of PA4884 207 99.99 99.99 0 1042.0
168122 gb|AAG08269.1|AE004901_11 (AE004901) hypothetical protein PA4884 [Pseudomonas aeruginosa PAO1] 207 99.99 99.99 0 1042.0
168123 gb|AAO57076.1| (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 207 54.10 67.14 6 547.0
168124 dbj|BAC52675.1| (AP005962) bll7410 [Bradyrhizobium japonicum USDA 110] 229 40.61 55.02 31 404.0
168125 dbj|BAC52676.1| (AP005962) bll7411 [Bradyrhizobium japonicum USDA 110] 217 38.24 58.06 12 391.0
GC ORFID: 46816How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4884Glimmer Score:
Start: 5015351Stop: 5014728
Length: 624
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4884 translation of PA4884Homolog Bit Score 405.0
Other Homologs: psyr_15may02_Scaffold9_revised_gene7979 (ORF: BLASTX 199.0), t_PA4884 (ORF: GLIMMER)
GC ORF Sequence
ATGCTTCGACTCAAGGCTTCCCCCGCGCTGCTCTTCGGCCTGCTCCTGGCCAGTGCCGCCAGCTTCGCCGCG
CAACCACCTGCGGGCATGCTGCAGCCGCTGCGCGGCACCATCCAGCAGGCCGCCGACGACCACCTGCAACTG
AAGGCCCGCAACGGCCAGCAACTGACGGTCAGGCTCACCGACAAGACCGCGATCCGCGCCGTGTCGCTGGCG
AAGCCGGAGGACATCCAGCCCGACAGCTTCATCGGTACCGCCGCCGTGCCGCAGCCCGACGGCACCCTGAAG
GCCCTCGAGGTGCATGTCTTCGCCCCCAGCCTGCGCGGCAGCGGCGAAGGCCACCGGCCCTGGGAGAACGCC
GATGGCAGCGCCTCGACCATGACCAACGGTACGGTCGGCAACCTGGTGGTCAGCCAGGGCCGGCGCATGACG
GTGAAATACGGCGATGGCGAGAAGACCGTGGTGGTGCCGGACGACGTGCCCATCGTCAGCCTGGAGCCGGGC
GAGCGCAGCCTGCTCAAGCCTGGCGCCAAGGTCGTGCTGTTCCCGCAGAAGGGCGCCGACGGCAGCCTCACC
GCCCTGGCCATCTCGGTCGGCAAGGACGGCGTGACCCCGCCGATGTGA