ViewGene
Locus Name:
GeneID:
Location:

GeneID:3813
TrivialName: PA14_15130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15130
PAO1 Ortholog Locus:PA3784
Sequence Length:573
Protein Length:190
Start: 1282829
Stop: 1283401
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07171.1|AE004797_6 (AE004797) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/190 (100%), Positives = 190/190 (100%)
Sequence:
ATGAACAGCAACAGATATCCCTTGCCGGCGCAGACCGGCCTGGTGGTGGCTCCCGGCCTGCCGCCGAAGAAC
TCCACCCTGCGTCCGGACCAGCTCAACAAGCGCCTGAGCAGCGCCTGGCACCATCTCTACGACCTTTGCCCG
GAACTGCTGAAGATCGATCCGCCGGATGGCCTGACCATCCTCCGCGGTTTCCTGCAATGGGCGGCCGAGCAG
AAGGCCGCCTGGAACTGGGCGATGCACCTGCGCCTGTACTGCTGGCTGTTGCAGTCGCCGTTCGGCGCCAAG
GTGACCGACGAGCATCTGGAGGTGCTGATGGACGCCTCCGCCGCGCGTTGGACGGTGGACGACACCAGCGCC
AACCGCGGCATCCTCCTGGCCAGCCAGGGCGGTGCGCACATCACCCAGGACTGGAAGGCGCCGCAGGCCGGC
GCCGGCACGCGCGTGCCGCTGGAGCGCCTGGACCTGCCGGCGCCGAACTGGACATTCGCCTATTGCGCGGTG
CCTGACCCGCGGCTGCGCGAGTTTCCGGGCTGGAAGCCGTTGCCGGCGCGTGGCTCGCTGGTCGGTTGA
Translation:
MNSNRYPLPAQTGLVVAPGLPPKNSTLRPDQLNKRLSSAWHHLYDLCPELLKIDPPDGLTILRGFLQWAAEQ
KAAWNWAMHLRLYCWLLQSPFGAKVTDEHLEVLMDASAARWTVDDTSANRGILLASQGGAHITQDWKAPQAG
AGTRVPLERLDLPAPNWTFAYCAVPDPRLREFPGWKPLPARGSLVG*
AnnotationID:3820GeneID:3813
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 18:06:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3784
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7629




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24771




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3813
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6034
                           PA3784_tr
                           translation of PA3784
                           190
                           99.99
                           99.99
                           0
                           1042.0
     

     
     
168120
                           gb|AAG07171.1|AE004797_6
                           (AE004797) hypothetical protein PA3784 [Pseudomonas aeruginosa PAO1]
                           190
                           99.99
                           99.99
                           0
                           1042.0
     

     
     
168121
                           gb|AAO56349.1|
                           (AE016866) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           212
                           32.54
                           45.28
                           41
                           309.0
     

     






      

          
GC ORFID: 46815How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3784Glimmer Score: 

          
Start: 3671108Stop: 3670536

          
Length: 573


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3784 translation of PA3784Homolog Bit Score 405.0

          
Other Homologs:  t_PA3784 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGCAACAGATATCCCTTGCCGGCGCAGACCGGCCTGGTGGTGGCTCCCGGCCTGCCGCCGAAGAAC 
TCCACCCTGCGTCCGGACCAGCTCAACAAGCGCCTGAGCAGCGCCTGGCACCATCTCTACGACCTTTGCCCG 
GAACTGCTGAAGATCGATCCGCCGGATGGCCTGACCATCCTCCGCGGTTTCCTGCAATGGGCGGCCGAGCAG 
AAGGCCGCCTGGAACTGGGCGATGCACCTGCGCCTGTACTGCTGGCTGTTGCAGTCGCCGTTCGGCGCCAAG 
GTGACCGACGAGCATCTGGAGGTGCTGATGGACGCCTCCGCCGCGCGTTGGACGGTGGACGACACCAGCGCC 
AACCGCGGCATCCTCCTGGCCAGCCAGGGCGGTGCGCACATCACCCAGGACTGGAAGGCGCCGCAGGCCGGC 
GCCGGCACGCGCGTGCCGCTGGAGCGCCTGGACCTGCCGGCGCCGAACTGGACATTCGCCTATTGCGCGGTG 
CCTGACCCGCGGCTGCGCGAGTTTCCGGGCTGGAAGCCGTTGCCGGCGCGTGGCTCGCTGGTCGGTTGA