ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3811

TrivialName: PA14_53370

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_53370

PAO1 Ortholog Locus: PA0843

Sequence Length: 624

Protein Length: 207

Start: 4732365

Stop: 4732988

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04232.1|AE004519_3 (AE004519) phospholipase accessory protein PlcR precursor [Pseudomonas aeruginosa PAO1] Identities = 206/207 (99%), Positives = 206/207 (99%)

Sequence:

ATGAGACCTACCCTGACCTGGACCTTGCTGGCCCTGCTGCTCTGCGGCACGGCCATCGGCGCCGTCCTGTTG
TTTTACCCATCGGAGCCGGCGCCCGTCGCGCCCTTCGCGTCTCCCCCGCAGGCCACACCGGCGGCAAAACCT
TCCATTCCTTCCCGAGCCCCCGAGATGAATACAGCCACCGCTCCCGACAACCTGGAACAGCAACTCGGCGAG
TTCGGCCGCAACGCCGGGCAGATGTCCGAGATCGAACGCAAGCAGGCCGCCGAAGGCCTGATCGAACAGCTC
AAGCGCGAGGTGGCGGTCGGCGCCGATCCGCGCCAGACCTTCGAGGAGATCCAGCGTCTGACGCCCTATGTG
GAGGCCGATGCCAGGCGCCGCGAGGCGCTCGACTTCGAGATCTGGATGGCGCTCAAGGACAACGCCTCCGTC
CAGCAGCAAGCGCCGACGCCTGGCGAGGAAGAGCAACTGCGCGAATACGCGCAAGAGTCGGACAAGGTGATC
GCCGAGGTGCTCGCCAGCGTCGACGGCGAGGAGCAGCGTCACGCCGCCATCGACGAACGCCTCAAGGCCCTG
CGCAAGCAGATCTTCGGCGAGGAGAACCCACGCCTGCTGCAACGCTGA

Translation:

MRPTLTWTLLALLLCGTAIGAVLLFYPSEPAPVAPFASPPQATPAAKPSIPSRAPEMNTATAPDNLEQQLGE
FGRNAGQMSEIERKQAAEGLIEQLKREVAVGADPRQTFEEIQRLTPYVEADARRREALDFEIWMALKDNASV
QQQAPTPGEEEQLREYAQESDKVIAEVLASVDGEEQRHAAIDERLKALRKQIFGEENPRLLQR*

AnnotationID:3818 GeneID:3811

AnnotatorUID: danlee

Modification Date/Time: 2004-04-30 16:04:30

Gene Name: plcR

Confidence Code: 1

GeneProduct: phospholipase accessory protein PlcR precursor

Cell Localization: ()

Synonyms: PA0843

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (23) Secreted Factors (toxins, enzymes, alginate)

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

The gene for the hemolytic phospholipase C, plcH, is adjacent.

Comment:

ReferenceID:7625

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24767

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3811

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6032 PA0843_tr translation of PA0843 207 99.51 99.51 0 1040.0

168097 gb|AAG04232.1|AE004519_3 (AE004519) phospholipase accessory protein PlcR precursor [Pseudomonas aeruginosa PAO1] 207 99.51 99.51 0 1040.0

168098 gb|AAA25970.1| (M17745) phospholipase C (plcR1) precursor [Pseudomonas aeruginosa] 207 99.51 99.51 0 1040.0

168099 gb|AAA25971.1| (M17745) phospholipase C (plcR2) [Pseudomonas aeruginosa] 207 72.46 72.46 56 748.0

GC ORFID: `46813`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0843`	Glimmer Score:
Start: `221542`	Stop: `220919`
Length: `624`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0843 translation of PA0843`	Homolog Bit Score `405.0`
Other Homologs: `t_PA0843 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGACCTACCCTGACCTGGACCTTGCTGGCCCTGCTGCTCTGCGGCACGGCCATCGGCGCCGTCCTGTTG TTTTACCCATCGGAGCCGGCGCCCGTCGCGCCCTTCGCGTCTCCCCCGCAGGCCACACCGGCGGCAAAACCT TCCATTCCTTCCCGAGCCCCCGAGATGAATACAGCCACCGCTCCCGACAACCTGGAACAGCAACTCGGCGAG TTCGGCCGCAACGCCGGGCAGATGTCCGAGATCGAACGCAAGCAGGCCGCCGAAGGCCTGATCGAACAGCTC AAGCGCGAGGTGGCGGTCGGCGCCGATCCGCGCCAGACCTTCGAGGAGATCCAGCGTCTGACGCCCTATGTG GAGGCCGATGCCAGGCGCCGCGAGGCGCTCGACTTCGAGATCTGGATGGCGCTCAAGGACAACGCCTCCGTC CAGCAGCAAGCGCCGACGCCTGGCGAGGAAGAGCAACTGCGCGAATACGCGCAAGAGTCGGACAAGGTGATC GCCGAGGTGCTCGCCAGCGTCGACGGCGAGGAGCAGCGTCACGCCGCCATCGACGAACGCCTCAAGGCCCTG CGCAAGCAGATCTTCGGCGAGGAGAACCCACGCCTGCTGCAACGCTGA