ViewGene

Locus Name:
GeneID:
Location:

GeneID:3810
TrivialName: PA14_58060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58060
PAO1 Ortholog Locus:PA4473
Sequence Length:603
Protein Length:200
Start: 5165413
Stop: 5166015
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07861.1|AE004861_2 (AE004861) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 199/200 (99%), Positives = 199/200 (99%)
Sequence:
GTGGCCGCCCACGCGGCCGGGCCGGACAAGCGGCCCCTGACTCGTTATCATGACGGCGTTTTCCACTGGACC
ACCACCATGGCTGAATTTCACGACGACGACTCGCAATTCGAAGAGAAGAGCAAGTCGCAGATCAAACGCGAG
CTGCATGCCCTGCAGGACCTCGGCGAGCGCCTGACCACCCTGCAACCGCAGTTGCTGGAGCGCCTGCCGCTC
ACCGACCCGCTACGCAAGGCGCTGCTCGAGGCGCCGAAGCACAAGGCGCACATCGCCCGCAAACGGCATATC
CAGTACATCGGCAAACTGATGCGCGACCAGGACGTGGACGCCATCGTCGCCCTCATCGACCAGGTGGACTCC
TCCACCCGCCAGTACAACGAACGTTTCCATGCCCTCGAACGTTGGCGCGACCAGTTGATCGCCGGCGGCGAC
GCAGCGCTCGACGCCTTCGTCGGGGAGTTCCCCGAGTGCGATCGCCAGCACCTGCGCGGCCTGGTCCGCCAC
GCCCAGCACGAGGCCGCGCACAACAAACCGCCGGCCGCCGCACGCAAAGTGTTCAAGTACATCCGCGAACTG
GACGAAACCAAGCGCGGCCTGCGCTAG
Translation:
MAAHAAGPDKRPLTRYHDGVFHWTTTMAEFHDDDSQFEEKSKSQIKRELHALQDLGERLTTLQPQLLERLPL
TDPLRKALLEAPKHKAHIARKRHIQYIGKLMRDQDVDAIVALIDQVDSSTRQYNERFHALERWRDQLIAGGD
AALDAFVGEFPECDRQHLRGLVRHAQHEAAHNKPPAAARKVFKYIRELDETKRGLR*
AnnotationID:3817GeneID:3810
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 09:09:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4473
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAM83766.1|AE013617_2 (AE013617) putative alpha helix protein [Yersinia pestis KIM]
          Length = 184

 Score =  135 bits (340), Expect = 1e-31
 Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 1/167 (0%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:14933
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24765
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31511
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3810_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3810

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6031 PA4473_tr translation of PA4473 200 99.50 99.50 0 1043.0
168081 gb|AAG07861.1|AE004861_2 (AE004861) hypothetical protein PA4473 [Pseudomonas aeruginosa PAO1] 200 99.00 99.50 0 1040.0
168083 gb|AAN66566.1|AE016285_4 (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440] 201 61.69 71.64 29 620.0
168082 gb|AAO57913.1| (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 200 61.50 72.50 27 629.0
168084 gb|AAM83766.1|AE013617_2 (AE013617) putative alpha helix protein [Yersinia pestis KIM] 201 39.80 55.72 18 334.0
GC ORFID: 46812How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4473Glimmer Score:
Start: 4429092Stop: 4429694
Length: 603
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4473 translation of PA4473Homolog Bit Score 406.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5558 (ORF: BLASTX 248.0), t_PA4473 (ORF: GLIMMER)
GC ORF Sequence
GTGGCCGCCCACGCGGCCGGGCCGGACAAGCGGCCCCTGACTCGTTATCATGACGGCGTTTTCCACTGGACC
ACCACCATGGCTGAATTTCACGACGACGACTCGCAATTCGAAGAGAAGAGCAAGTCGCAGATCAAACGCGAG
CTGCATGCCCTGCAGGACCTCGGCGAGCGCCTGACCACCCTGCAACCGCAGTTGCTGGAGCGCCTGCCGCTC
ACCGACCCGCTACGCAAGGCGCTGCTCGAGGCGCCGAAGCACAAGGCGCACATCGCCCGCAAACGGCATATC
CAGTACATCGGCAAACTGATGCGCGACCAGGACGTGGACGCCATCGTCGCCCTCATCGACCAGGTGGACTCC
TCCACCCGCCAGTACAACGAACGTTTCCATGCCCTCGAACGTTGGCGCGACCAGTTGATCGCCGGCGGCGAC
GCAGCGCTCGACGCCTTCGTCGGGGAGTTCCCCGAGTGCGATCGCCAGCACCTGCGCGGCCTGGTCCGCCAC
GCCCAGCACGAGGCCGCGCACAACAAACCGCCGGCCGCCGCACGCAAAGTGTTCAAGTACATCCGCGAACTG
GACGAAACCAAGCGCGGCCTGCGCTAG