ViewGene
Locus Name:
GeneID:
Location:

GeneID:3807
TrivialName: PA14_22800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22800
PAO1 Ortholog Locus:PA3201
Sequence Length:588
Protein Length:195
Start: 1980809
Stop: 1980222
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06589.1|AE004744_4 (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 195/195 (100%), Positives = 195/195 (100%)
Sequence:
ATGAAGCAATTCATCGATTTCATCCCACTGATCCTGTTCTTCATCGTCTACAAGATAGACCCTCAGAACGTC
GAGTTCGCCGGGTTCAATCTGAGTGGCATCTACGGCGCGACCGCGACCCTGATCCTCGCCTCGGTGATCGTC
TACGGCGCCCTCTGGCTCAAGCACCGCCACCTGGAAAAGAGCCAGTGGTTCACCCTCGGCGCCTGCCTGGTC
CTCGGCGGCCTGACCCTGGCCTTCCACGAGGACACCTTCCTCAAATGGAAGGCGCCGCTGGTCAACTGGCTG
TTCGCCCTGGCCTTCGCCGGCAGTCACTTCATCGGCGACAAGCCGATGATCCAGCGCATCATGGGCCATGCC
ATCCAGTTGCCGCAGGGCCTCTGGGTGCGCCTGAACATCGCCTGGGTGGTGTTCTTCCTGGTGTGCGGCTTC
GCCAACCTGTACGTGGTCTTCACCTATCCGAACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTCGGCATG
ACCTTGCTGTTCCTGATCGGCCAGGGCCTGTTCCTGGCTCGCCACCTGCACGACGCCGATACCGGCGAAAAG
CCCAAGGACTGA
Translation:
MKQFIDFIPLILFFIVYKIDPQNVEFAGFNLSGIYGATATLILASVIVYGALWLKHRHLEKSQWFTLGACLV
LGGLTLAFHEDTFLKWKAPLVNWLFALAFAGSHFIGDKPMIQRIMGHAIQLPQGLWVRLNIAWVVFFLVCGF
ANLYVVFTYPNFWVDFKVFGSLGMTLLFLIGQGLFLARHLHDADTGEKPKD*
AnnotationID:3814GeneID:3807
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:08
Gene Name:yciB
Confidence Code:3
GeneProduct:putative intracellular septation protein
Cell Localization:()
Synonyms:ispZ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:putative cytoplasmic membrane protein
Functional Category Confidence Code:5
COGs:pfam04279,COG2917
Secondary Functional Category(ies):membrane proteins; putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55329.1| (AE016862) intracellular septation protein A [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 198

 Score =  296 bits (759), Expect = 4e-80
 Identities = 138/196 (70%), Positives = 163/196 (83%), Gaps = 3/196 (1%)

>gb|AAN70075.1|AE016647_5 (AE016790) intracellular septation protein A [Pseudomonas putida
           KT2440]
          Length = 197

 Score =  295 bits (756), Expect = 8e-80
 Identities = 135/197 (68%), Positives = 164/197 (83%), Gaps = 2/197 (1%)

>gb|AAB60091.1| (U24198) yciB gene product [Escherichia coli]
          Length = 179

 Score =  173 bits (439), Expect = 5e-43
 Identities = 85/189 (44%), Positives = 120/189 (63%), Gaps = 13/189 (6%)






 
Structural Features:
pfam04279, IspA, Intracellular septation protein A.
CD-Length = 176 residues,  99.4% aligned
Score =  193 bits (491), Expect = 2e-50
Identities = 84/187 (44%), Positives = 117/187 (62%), Gaps = 13/187 (6%)

COG2917, Intracellular septation protein A 
[Cell division and chromosome partitioning]
CD-Length = 180 residues, 100.0% aligned
Score =  203 bits (519), Expect = 1e-53
Identities = 89/192 (46%), Positives = 121/192 (63%), Gaps = 13/192 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7617




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24759




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32342




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3807_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3807
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6028
                           PA3201_tr
                           translation of PA3201
                           195
                           99.99
                           99.99
                           0
                           1044.0
     

     
     
168011
                           gb|AAG06589.1|AE004744_4
                           (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           195
                           99.99
                           99.99
                           0
                           1044.0
     

     
     
168012
                           gb|AAO55329.1|
                           (AE016862) intracellular septation protein A [Pseudomonas syringae pv. tomato str. DC3000]
                           199
                           69.34
                           81.90
                           5
                           763.0
     

     
     
168013
                           gb|AAN70075.1|AE016647_5
                           (AE016790) intracellular septation protein A [Pseudomonas putida KT2440]
                           197
                           68.52
                           83.24
                           2
                           758.0
     

     
     
168024
                           gb|AAB60115.1|
                           (U24201) yciB gene product [Escherichia coli]
                           196
                           43.36
                           60.71
                           18
                           443.0
     

     






      

          
GC ORFID: 46809How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3201Glimmer Score: 

          
Start: 2973122Stop: 2973709

          
Length: 588


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3201 translation of PA3201Homolog Bit Score 406.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2001 (ORF: BLASTX 305.0), t_PA3201 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCAATTCATCGATTTCATCCCACTGATCCTGTTCTTCATCGTCTACAAGATAGACCCTCAGAACGTC 
GAGTTCGCCGGGTTCAATCTGAGTGGCATCTACGGCGCGACCGCGACCCTGATCCTCGCCTCGGTGATCGTC 
TACGGCGCCCTCTGGCTCAAGCACCGCCACCTGGAAAAGAGCCAGTGGTTCACCCTCGGCGCCTGCCTGGTC 
CTCGGCGGCCTGACCCTGGCCTTCCACGAGGACACCTTCCTCAAATGGAAGGCGCCGCTGGTCAACTGGCTG 
TTCGCCCTGGCCTTCGCCGGCAGTCACTTCATCGGCGACAAGCCGATGATCCAGCGCATCATGGGCCATGCC 
ATCCAGTTGCCGCAGGGCCTCTGGGTGCGCCTGAACATCGCCTGGGTGGTGTTCTTCCTGGTGTGCGGCTTC 
GCCAACCTGTACGTGGTCTTCACCTATCCGAACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTCGGCATG 
ACCTTGCTGTTCCTGATCGGCCAGGGCCTGTTCCTGGCTCGCCACCTGCACGACGCCGATACCGGCGAAAAG 
CCCAAGGACTGA