ViewGene

Locus Name:
GeneID:
Location:

GeneID:3805
TrivialName: PA14_04940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04940
PAO1 Ortholog Locus:PA0377
Sequence Length:606
Protein Length:201
Start: 436338
Stop: 436943
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03766.1|AE004475_8 (AE004475) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 201/201 (100%), Positives = 201/201 (100%)
Sequence:
ATGCCGCGCAATACCCGCTGGCTGTTCTACCTGTCGCTGGCGGTCCTGACCTTCGTCGTCGGTGCCTGGCTG
GTCCGTACGCCGGAACCGGCGCGGCCGTTGCCGTGGCTGGCCGACTGGCAGGAGCAGGTGCTGGCGCCGTTG
GCGGACAACGCCCTGACCCTGCGCCAGCTGCACGACGCGGTGGATGGCGAGCTGTGGGTGGACCCGCGCCTG
GATGGCGTGCGCCTGGCCTTCCGTGGCCGCCTGCTGGGCGACGGCGGCCCCTGGCAGGTGGAAGGCGAGCTG
GGTCTGAGCGCCGAGGAGCAACTGAGCCTGCAGCGGGCATCCGCGTTGCAGCCTGGCAGCGCGCCGCAGCCA
TTGAGCGCCGGATTGGAAGGACAGTTGGGCGACAAGCCGATCGTGGCGCTGAGCATGATTCCCGAAGGCAGG
GTTGGTGCCGAGCGGCTGCTGGCCAGTCTCGGCCAGCCGCGCCTGCGCCTGCAACTGGCCCAGGGCGAGGCC
TGGGTCTATCCGCAACTGGGCCTGACCGCGCACCTGCCGGACGACGACTTGCGGCTGATGCTCGCGGTGCCG
CGCCAGGCCCTGGAAAAACCGCCGCGTTGA
Translation:
MPRNTRWLFYLSLAVLTFVVGAWLVRTPEPARPLPWLADWQEQVLAPLADNALTLRQLHDAVDGELWVDPRL
DGVRLAFRGRLLGDGGPWQVEGELGLSAEEQLSLQRASALQPGSAPQPLSAGLEGQLGDKPIVALSMIPEGR
VGAERLLASLGQPRLRLQLAQGEAWVYPQLGLTAHLPDDDLRLMLAVPRQALEKPPR*
AnnotationID:3812GeneID:3805
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:14
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0377
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7613
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24755
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3805

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6026 PA0377_tr translation of PA0377 201 99.99 99.99 0 1045.0
168009 gb|AAG03766.1|AE004475_8 (AE004475) hypothetical protein PA0377 [Pseudomonas aeruginosa PAO1] 201 99.99 99.99 0 1045.0
GC ORFID: 46807How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0377Glimmer Score:
Start: 6237680Stop: 6238285
Length: 606
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0377 translation of PA0377Homolog Bit Score 407.0
Other Homologs: t_PA0377 (ORF: GLIMMER)
GC ORF Sequence
ATGCCGCGCAATACCCGCTGGCTGTTCTACCTGTCGCTGGCGGTCCTGACCTTCGTCGTCGGTGCCTGGCTG
GTCCGTACGCCGGAACCGGCGCGGCCGTTGCCGTGGCTGGCCGACTGGCAGGAGCAGGTGCTGGCGCCGTTG
GCGGACAACGCCCTGACCCTGCGCCAGCTGCACGACGCGGTGGATGGCGAGCTGTGGGTGGACCCGCGCCTG
GATGGCGTGCGCCTGGCCTTCCGTGGCCGCCTGCTGGGCGACGGCGGCCCCTGGCAGGTGGAAGGCGAGCTG
GGTCTGAGCGCCGAGGAGCAACTGAGCCTGCAGCGGGCATCCGCGTTGCAGCCTGGCAGCGCGCCGCAGCCA
TTGAGCGCCGGATTGGAAGGACAGTTGGGCGACAAGCCGATCGTGGCGCTGAGCATGATTCCCGAAGGCAGG
GTTGGTGCCGAGCGGCTGCTGGCCAGTCTCGGCCAGCCGCGCCTGCGCCTGCAACTGGCCCAGGGCGAGGCC
TGGGTCTATCCGCAACTGGGCCTGACCGCGCACCTGCCGGACGACGACTTGCGGCTGATGCTCGCGGTGCCG
CGCCAGGCCCTGGAAAAACCGCCGCGTTGA