ViewGene

Locus Name:
GeneID:
Location:

GeneID:3804
TrivialName: PA14_61950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61950
PAO1 Ortholog Locus:PA4683
Sequence Length:603
Protein Length:200
Start: 5524406
Stop: 5523804
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08070.1|AE004882_1 (AE004882) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 200/200 (100%), Positives = 200/200 (100%)
Sequence:
TTGAACGACGCCGCCTACGCCGAGGCCCGCTGGGCCGAACTGCAGAACCAGGGTGACCTTGCCTGGGACCTG
GATGCCATCACCAACCGCAGCGAGGCGATCGCCTTCCTCAAACGTTTCGAGAACCGCCTGTGCATCTACTCG
GCCTATGTCGAGAAGCTCTACAGCAACTACAGTTTCGTGATTCCCGAGAGCGACCATGGCGGCATCACCATC
CTGCCCAGCGAGCAGGCCTGGCACGACACCTTCCACGATATCCCGCTGGCCGCGGTGGAGCCCACCGGGATC
CATATCCTGCCGGGCGAGACCATGGGCTATCGCGGGCTCTACCTGAAGATTCCCGGCGAGCACCGCCTGGTG
GCGTCGAAGGAATTGCCGTTCCAGGAAGGGTTGAAACTGCTGATCCAGCGTTACCAGGCTCACGACGACGTG
TTCCTGCCGATCCTGGTCAAGGGCGACCTGCGCGAGTACGAAGCGCGCATGCCCTCGCTGCACCTGCACCGG
ATCAACCCCGCCCGCCTCAGCGCACACTCCCTGCTCAGCCTCAACGCCATCAAGGGTGCCATTGCCGACCAT
CTGATCGGCCTGTTCCGCCAGCAGTGA
Translation:
MNDAAYAEARWAELQNQGDLAWDLDAITNRSEAIAFLKRFENRLCIYSAYVEKLYSNYSFVIPESDHGGITI
LPSEQAWHDTFHDIPLAAVEPTGIHILPGETMGYRGLYLKIPGEHRLVASKELPFQEGLKLLIQRYQAHDDV
FLPILVKGDLREYEARMPSLHLHRINPARLSAHSLLSLNAIKGAIADHLIGLFRQQ*
AnnotationID:3811GeneID:3804
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 08:08:09
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4683
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:14931
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24753
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3804

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6025 PA4683_tr translation of PA4683 200 99.99 99.99 0 1045.0
168008 gb|AAG08070.1|AE004882_1 (AE004882) hypothetical protein PA4683 [Pseudomonas aeruginosa PAO1] 200 99.50 99.99 0 1043.0
GC ORFID: 46806How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4683Glimmer Score:
Start: 4788086Stop: 4787484
Length: 603
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4683 translation of PA4683Homolog Bit Score 407.0
Other Homologs: t_PA4683 (ORF: GLIMMER)
GC ORF Sequence
TTGAACGACGCCGCCTACGCCGAGGCCCGCTGGGCCGAACTGCAGAACCAGGGTGACCTTGCCTGGGACCTG
GATGCCATCACCAACCGCAGCGAGGCGATCGCCTTCCTCAAACGTTTCGAGAACCGCCTGTGCATCTACTCG
GCCTATGTCGAGAAGCTCTACAGCAACTACAGTTTCGTGATTCCCGAGAGCGACCATGGCGGCATCACCATC
CTGCCCAGCGAGCAGGCCTGGCACGACACCTTCCACGATATCCCGCTGGCCGCGGTGGAGCCCACCGGGATC
CATATCCTGCCGGGCGAGACCATGGGCTATCGCGGGCTCTACCTGAAGATTCCCGGCGAGCACCGCCTGGTG
GCGTCGAAGGAATTGCCGTTCCAGGAAGGGTTGAAACTGCTGATCCAGCGTTACCAGGCTCACGACGACGTG
TTCCTGCCGATCCTGGTCAAGGGCGACCTGCGCGAGTACGAAGCGCGCATGCCCTCGCTGCACCTGCACCGG
ATCAACCCCGCCCGCCTCAGCGCACACTCCCTGCTCAGCCTCAACGCCATCAAGGGTGCCATTGCCGACCAT
CTGATCGGCCTGTTCCGCCAGCAGTGA