ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3803

TrivialName: PA14_62100

AnnotatorUID: ericdeziel

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_62100

PAO1 Ortholog Locus: PA4691

Sequence Length: 609

Protein Length: 202

Start: 5542343

Stop: 5541735

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08077.1|AE004883_1 (AE004883) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 200/202 (99%), Positives = 200/202 (99%) to PA4691 of PAO1.

Sequence:

ATGCGCTACTGGTATCTGCGCCTTGCGGTATTCCTGGGGGCGCTGGCAGTGCCGGCCTGGTGGTTGTACCAA
GCCTGGATCTTTGCCCTCGGACCTGACCCGGGCAAGACCCTGGTCGATCGACTGGGGCTGGGCGCCTTGGTA
TTGCTGCTACTCACCCTGGCGATGACGCCACTGCAGAAGCTGAGCGGCTGGCCGGGCTGGATTGCCGTGCGT
CGCCAGTTGGGGTTGTGGTGCTTCACCTATGTGCTGCTGCACCTGAGCGCTTACTGCGTGTTCATCCTGGGG
TTGGACTGGGGGCAGTTGGGCATCGAATTGAGCAAGCGTCCCTACATCATCGTGGGAATGCTTGGATTCGTC
TGCCTGTTCCTGTTGGCGATCACTTCCAACCGCTTCGCCATGCGCAAGCTCGGTAGCCGCTGGAAGAAGCTG
CATCGCCTGGTCTACCTGATCCTTGGGCTCGGCTTGCTGCACATGCTCTGGGTGGTGCGGGCAGACCTGGAG
GAGTGGACCCTGTACGCTGTGGTTGGTGCGTCGCTCATGCTGCTGCGGCTACCCTCGATCGCTCGCCGCCTG
CCCAGGCTTCGAACTCGTCCCGGTGTTTCGTAA

Translation:

MRYWYLRLAVFLGALAVPAWWLYQAWIFALGPDPGKTLVDRLGLGALVLLLLTLAMTPLQKLSGWPGWIAVR
RQLGLWCFTYVLLHLSAYCVFILGLDWGQLGIELSKRPYIIVGMLGFVCLFLLAITSNRFAMRKLGSRWKKL
HRLVYLILGLGLLHMLWVVRADLEEWTLYAVVGASLMLLRLPSIARRLPRLRTRPGVS*

AnnotationID:3810 GeneID:3803

AnnotatorUID: diggins

Modification Date/Time: 2006-02-06 22:10:27

Gene Name:

Confidence Code: 3

GeneProduct: putative membrane protein

Cell Localization: ()

Synonyms: PA4691

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2717

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO54520.1| (AE016859) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 210

 Score =  315 bits (806), Expect = 1e-85
 Identities = 144/195 (73%), Positives = 167/195 (85%)

>gb|AAN70248.1|AE016665_1 (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 197

 Score =  286 bits (731), Expect = 7e-77
 Identities = 128/195 (65%), Positives = 160/195 (82%)

>emb|CAC93131.1| (AJ414158) putative membrane protein [Yersinia pestis CO92]
          Length = 206

 Score =  138 bits (347), Expect = 2e-32
 Identities = 79/194 (40%), Positives = 115/194 (59%), Gaps = 3/194 (1%)

Structural Features:

COG2717, Predicted membrane protein [Function unknown].
CD-Length = 209 residues,  96.7% aligned
Score =  171 bits (434), Expect = 7e-44
Identities = 93/202 (46%), Positives = 124/202 (61%)

Genomic Context:

Comment:

ReferenceID:7609

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24751

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:38238

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3803_cdd.html

URL:

Homologs By Global Alignment

Gene ID:3803

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6024 PA4691_tr translation of PA4691 202 99.00 99.00 0 1046.0

167994 gb|AAG08077.1|AE004883_1 (AE004883) hypothetical protein PA4691 [Pseudomonas aeruginosa PAO1] 202 99.00 99.00 0 1046.0

167995 gb|AAO54520.1| (AE016859) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 213 68.07 79.34 14 800.0

167996 gb|AAN70248.1|AE016665_1 (AE016791) membrane protein, putative [Pseudomonas putida KT2440] 202 63.36 79.20 5 729.0

167997 gb|AAM83800.1|AE013620_11 (AE013620) hypothetical protein [Yersinia pestis KIM] 212 38.67 56.13 16 344.0

GC ORFID: `46805`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4691`	Glimmer Score:
Start: `4806023`	Stop: `4805415`
Length: `609`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA4691 translation of PA4691`	Homolog Bit Score `407.0`
Other Homologs: `psyr_15may02_Scaffold19_revised_gene2878 (ORF: BLASTX 306.0), t_PA4691 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGCTACTGGTATCTGCGCCTTGCGGTATTCCTGGGGGCGCTGGCAGTGCCGGCCTGGTGGTTGTACCAA GCCTGGATCTTTGCCCTCGGACCTGACCCGGGCAAGACCCTGGTCGATCGACTGGGGCTGGGCGCCTTGGTA TTGCTGCTACTCACCCTGGCGATGACGCCACTGCAGAAGCTGAGCGGCTGGCCGGGCTGGATTGCCGTGCGT CGCCAGTTGGGGTTGTGGTGCTTCACCTATGTGCTGCTGCACCTGAGCGCTTACTGCGTGTTCATCCTGGGG TTGGACTGGGGGCAGTTGGGCATCGAATTGAGCAAGCGTCCCTACATCATCGTGGGAATGCTTGGATTCGTC TGCCTGTTCCTGTTGGCGATCACTTCCAACCGCTTCGCCATGCGCAAGCTCGGTAGCCGCTGGAAGAAGCTG CATCGCCTGGTCTACCTGATCCTTGGGCTCGGCTTGCTGCACATGCTCTGGGTGGTGCGGGCAGACCTGGAG GAGTGGACCCTGTACGCTGTGGTTGGTGCGTCGCTCATGCTGCTGCGGCTACCCTCGATCGCTCGCCGCCTG CCCAGGCTTCGAACTCGTCCCGGTGTTTCGTAA