ViewGene
Locus Name:
GeneID:
Location:

GeneID:3800
TrivialName: PA14_25490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25490
PAO1 Ortholog Locus:PA2983
Sequence Length:636
Protein Length:211
Start: 2228579
Stop: 2229214
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06371.1|AE004723_15 (AE004723) probable tolQ-type transport protein [Pseudomonas aeruginosa PAO1]
Identities = 211/211 (100%), Positives = 211/211 (100%)
Sequence:
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCC
ATCGTCGCGGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGG
AAGCAGATCAAGGGCAAGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAG
ATCCTCGCCGCCGGCCTGGCCAACTCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCT
TCCGGTGTCATCCACGAGCTGGAGCGCTACCTCAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTG
GGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCGGCGCCTTCATGGACAACGGCATGGCCAACTCG
CCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCCGGCCTGCTGGTGGCGATTCCGGCG
GTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGAGCAGGAGGCCATCAAG
CTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA
Translation:
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGE
ILAAGLANSKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANS
PMLAAGISKALITTAAGLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA*
AnnotationID:3807GeneID:3800
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 09:09:35
Gene Name:
Confidence Code:3
GeneProduct:putative tolQ-type transport protein
Cell Localization:()
Synonyms:PA2983
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative biopolymer transport protein
Functional Category Confidence Code:5
COGs:COG0811
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67517.1|AE016380_5 (AE016781) MotA/TolQ/ExbB proton channel family protein
           [Pseudomonas putida KT2440]
          Length = 224

 Score =  322 bits (825), Expect = 9e-88
 Identities = 169/212 (79%), Positives = 188/212 (88%), Gaps = 2/212 (0%)

>gb|AAO57314.1| (AE016869) MotA/TolQ/ExbB proton channel family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 214

 Score =  287 bits (734), Expect = 3e-77
 Identities = 147/197 (74%), Positives = 173/197 (87%), Gaps = 1/197 (0%)

>emb|CAD85082.1| (BX321860) MotA/TolQ/ExbB proton channel family [Nitrosomonas
           europaea ATCC 19718]
          Length = 202

 Score =  199 bits (506), Expect = 9e-51
 Identities = 103/203 (50%), Positives = 141/203 (69%), Gaps = 1/203 (0%)






 
Structural Features:
COG0811, TolQ, Biopolymer transport proteins 
[Intracellular trafficking and secretion]
CD-Length = 216 residues,  93.5% aligned
Score =  143 bits (363), Expect = 1e-35
Identities = 73/205 (35%), Positives = 105/205 (51%), Gaps = 1/205 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14927




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24745




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36071




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3800_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3800
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6021
                           PA2983_tr
                           translation of PA2983
                           211
                           99.99
                           99.99
                           0
                           1046.0
     

     
     
167846
                           gb|AAG06371.1|AE004723_15
                           (AE004723) probable tolQ-type transport protein [Pseudomonas aeruginosa PAO1]
                           211
                           99.52
                           99.99
                           0
                           1043.0
     

     
     
167848
                           emb|CAB50918.1|
                           (AJ243354) hypothetical protein [Pseudomonas stutzeri]
                           211
                           76.77
                           84.83
                           12
                           801.0
     

     
     
167847
                           gb|AAN67517.1|AE016380_5
                           (AE016781) MotA/TolQ/ExbB proton channel family protein [Pseudomonas putida KT2440]
                           225
                           75.55
                           83.55
                           15
                           832.0
     

     
     
167849
                           gb|AAO57314.1|
                           (AE016869) MotA/TolQ/ExbB proton channel family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           226
                           65.48
                           76.99
                           27
                           730.0
     

     






      

          
GC ORFID: 46802How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2983Glimmer Score: 

          
Start: 2725346Stop: 2724711

          
Length: 636


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2983 translation of PA2983Homolog Bit Score 407.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2175 (ORF: BLASTX 316.0), t_PA2983 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCC 
ATCGTCGCGGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGG 
AAGCAGATCAAGGGCAAGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAG 
ATCCTCGCCGCCGGCCTGGCCAACTCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCT 
TCCGGTGTCATCCACGAGCTGGAGCGCTACCTCAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTG 
GGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCGGCGCCTTCATGGACAACGGCATGGCCAACTCG 
CCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCCGGCCTGCTGGTGGCGATTCCGGCG 
GTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGAGCAGGAGGCCATCAAG 
CTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA