ViewGene

Locus Name:
GeneID:
Location:

GeneID: 380

TrivialName: PA14_52300

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_52300

PAO1 Ortholog Locus: PA0924

Sequence Length: 1929

Protein Length: 642

Start: 4640623

Stop: 4642551

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04313.1|AE004526_8 (AE004526) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 639/642 (99%), Positives = 640/642 (99%)

Sequence:

ATGTTCGCCCCACCCAGCACCGAGACACTCAACCGCTTCTTTCTGTTGTCGTGGCTGGTGGTGCTCTGGCAG
GTGCTGCGCCTGCAGGACGGGATCGTCTTCGACGACGCCTGGCTGCCGCTCTGGAGCGTCGCTGCCAGCCTG
AGCTACGCCTTCCTTTATATAGTCCCGGTGTACCTCGCCTGCCGACTGCTCCTGCATTTCCATGACCGCCTT
CCCGTGCGCCTCAGTCCGTGGCTGGCAGGCGTGCTGGCCATCGTCGGCAGCGCGGCGGTACAGATACTGCTC
TACGCCGACCGCACCCTCTACGACCTGTACGGATTCCACCTCAACGGTTTCAGCATCGGCCTGCTGGTCTCG
CCCGGCGGCCTCTCCAGCCTCGGCAGCGGCGACGGCACCCTGCTCAGCGCAAGCCTGGCGGCCCTGGCCCTG
CTCTGTCTGCAGGTGCTGCTGTACAGCGCCTGCCAGGTCAGCCGCGAACGCCTTCCCGCGCTCCCTCGGCGC
GCCTGGCGCTACCTGTTGGCGGCCTTCCTCTGCCTGGCCCTGGGCGAACGCCTGGCCTATGCGTTCAGCTCC
CTGCGCGACTACCGGCCGATCCTGCTGGCCAGCGAACGCTATCCGCTGTACCTGCCATTGACCGTCCGCAGC
CTGGCGCGAAGCCTGGGCATCCAGCCGACGCCCACCCAGCGCGAGCTGCTCCAGCAGCAGAGCGACCTGCAC
TATCCGCTCCGGCCGCTGGAGATCAGCGCCCCGGCGCACCCATTGAACATCGTCTGGATCGTCGCCGAGTCG
CTCCGCGGGGACATGCTCGATCCGCGCTACATGCCCAGGCTGTGGGACTTCTCCAACCGGGCGATCCGCCTG
GACAACCACTACAGCAGCGGCAACCTGACCCAGATGGGCGTCTTCGGCATGTTCTACGGGCTGCACGGCGGC
TACTGGGACGCCGTGCTGAAGGCCGGCCAGCCGCCGGTGCTCATGGAGGTACTCAGGCAGCAGAACTACCAG
TTCCGGATCAATGCCGCGCAACGTTTCAGCTATCCGCCCTTCGACCGCAGCGTGTTCGTCAACCTGCGCCCC
CAGGACCTGCACGTGCTGGATAGCCCGGAGCCTGCCTGGCAGCGCGACGCCCGGAACACCGACGACCTGCTG
CGCTTCGTCGATCGCCGACTACCCGACCGGCCGTTCTTCGCCTGCCTGTTCCTCGAGTCGAGCCACGCCAAC
TACAGCTTCCGCGACGAGACCGCGAAAATCCGCCCCTATCTGGTCAACTTCAACTACCTGACCACCGATTTC
CAGGCGCAGATGCCGCTGATCAAGAACCGCTACCTGAATGCCGTGCGCGAAGTCGATACACAGATCGGCCGC
CTGCTGCAGCACCTGGAAAACCAGCACCTGCTGGAAAACACCGCGGTAGTGGTGCTCGGCGACCATGGGGAA
GAGTTCATGGAACGCTCGCGCTGGGGCCACAATACCGAGTTCAATCGCTACCAGACCGGCACCGTCGCCGTG
CTGAGCATTCCCGGACAGGCGCCCCGTGCCGTCCGCGGCATCACCAGCCACATCGACCTGCCCGCAACGCTC
CTGCCGCTGCTGGGCGTACGCAATCCGCCCCGCGACTACTCGCTGGGACAGGACCTGCTCGCAGCGGACTAC
CATCGCGACTATGCGGTGAGCGCCGATACCACGCGCATCGCCTACCTGGGCGAAGGCTTCAAGGTGAGCTTC
CCACTGCGTGGCGCGGACCGTCACCACGGTCCGGTGAGCGATGGCGACGACCGCCCGCTCGACGTGGAACAA
CAGGAAGCCATACGCGGCCCGCTCCGTGCAGCACGCCTGGAACTGCTGCAGGATCTCGGCCGCTTCAGCGCC
CTGCCGGTAAGGGAAGAGCCGTCGCCGCGGAGCCTCGCGACTTCGTTGACGCCATGA

Translation:

MFAPPSTETLNRFFLLSWLVVLWQVLRLQDGIVFDDAWLPLWSVAASLSYAFLYIVPVYLACRLLLHFHDRL
PVRLSPWLAGVLAIVGSAAVQILLYADRTLYDLYGFHLNGFSIGLLVSPGGLSSLGSGDGTLLSASLAALAL
LCLQVLLYSACQVSRERLPALPRRAWRYLLAAFLCLALGERLAYAFSSLRDYRPILLASERYPLYLPLTVRS
LARSLGIQPTPTQRELLQQQSDLHYPLRPLEISAPAHPLNIVWIVAESLRGDMLDPRYMPRLWDFSNRAIRL
DNHYSSGNLTQMGVFGMFYGLHGGYWDAVLKAGQPPVLMEVLRQQNYQFRINAAQRFSYPPFDRSVFVNLRP
QDLHVLDSPEPAWQRDARNTDDLLRFVDRRLPDRPFFACLFLESSHANYSFRDETAKIRPYLVNFNYLTTDF
QAQMPLIKNRYLNAVREVDTQIGRLLQHLENQHLLENTAVVVLGDHGEEFMERSRWGHNTEFNRYQTGTVAV
LSIPGQAPRAVRGITSHIDLPATLLPLLGVRNPPRDYSLGQDLLAADYHRDYAVSADTTRIAYLGEGFKVSF
PLRGADRHHGPVSDGDDRPLDVEQQEAIRGPLRAARLELLQDLGRFSALPVREEPSPRSLATSLTP*

AnnotationID:389 GeneID:380

AnnotatorUID: danlee

Modification Date/Time: 2004-05-06 16:04:20

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA0924

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3083

Secondary Functional Category(ies): Putative enzyme

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG3083, Predicted hydrolase of alkaline phosphatase superfamily. Score: 697, 0.0
pfam00884, Sulfatase. Score: 117, 6e-27

Genomic Context:

Comment:

ReferenceID:763

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17905

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:380

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

636 PA0924_tr translation of PA0924 642 99.53 99.68 0 3337.0

29475 gb|AAG04313.1|AE004526_8 (AE004526) hypothetical protein PA0924 [Pseudomonas aeruginosa PAO1] 642 99.53 99.68 0 3337.0

GC ORFID: `43382`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0924`	Glimmer Score:
Start: `313284`	Stop: `311356`
Length: `1929`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0924 translation of PA0924`	Homolog Bit Score `1290.0`
Other Homologs: `t_PA0924 (ORF: GLIMMER)`
GC ORF Sequence
ATGTTCGCCCCACCCAGCACCGAGACACTCAACCGCTTCTTTCTGTTGTCGTGGCTGGTGGTGCTCTGGCAG GTGCTGCGCCTGCAGGACGGGATCGTCTTCGACGACGCCTGGCTGCCGCTCTGGAGCGTCGCTGCCAGCCTG AGCTACGCCTTCCTTTATATAGTCCCGGTGTACCTCGCCTGCCGACTGCTCCTGCATTTCCATGACCGCCTT CCCGTGCGCCTCAGTCCGTGGCTGGCAGGCGTGCTGGCCATCGTCGGCAGCGCGGCGGTACAGATACTGCTC TACGCCGACCGCACCCTCTACGACCTGTACGGATTCCACCTCAACGGTTTCAGCATCGGCCTGCTGGTCTCG CCCGGCGGCCTCTCCAGCCTCGGCAGCGGCGACGGCACCCTGCTCAGCGCAAGCCTGGCGGCCCTGGCCCTG CTCTGTCTGCAGGTGCTGCTGTACAGCGCCTGCCAGGTCAGCCGCGAACGCCTTCCCGCGCTCCCTCGGCGC GCCTGGCGCTACCTGTTGGCGGCCTTCCTCTGCCTGGCCCTGGGCGAACGCCTGGCCTATGCGTTCAGCTCC CTGCGCGACTACCGGCCGATCCTGCTGGCCAGCGAACGCTATCCGCTGTACCTGCCATTGACCGTCCGCAGC CTGGCGCGAAGCCTGGGCATCCAGCCGACGCCCACCCAGCGCGAGCTGCTCCAGCAGCAGAGCGACCTGCAC TATCCGCTCCGGCCGCTGGAGATCAGCGCCCCGGCGCACCCATTGAACATCGTCTGGATCGTCGCCGAGTCG CTCCGCGGGGACATGCTCGATCCGCGCTACATGCCCAGGCTGTGGGACTTCTCCAACCGGGCGATCCGCCTG GACAACCACTACAGCAGCGGCAACCTGACCCAGATGGGCGTCTTCGGCATGTTCTACGGGCTGCACGGCGGC TACTGGGACGCCGTGCTGAAGGCCGGCCAGCCGCCGGTGCTCATGGAGGTACTCAGGCAGCAGAACTACCAG TTCCGGATCAATGCCGCGCAACGTTTCAGCTATCCGCCCTTCGACCGCAGCGTGTTCGTCAACCTGCGCCCC CAGGACCTGCACGTGCTGGATAGCCCGGAGCCTGCCTGGCAGCGCGACGCCCGGAACACCGACGACCTGCTG CGCTTCGTCGATCGCCGACTACCCGACCGGCCGTTCTTCGCCTGCCTGTTCCTCGAGTCGAGCCACGCCAAC TACAGCTTCCGCGACGAGACCGCGAAAATCCGCCCCTATCTGGTCAACTTCAACTACCTGACCACCGATTTC CAGGCGCAGATGCCGCTGATCAAGAACCGCTACCTGAATGCCGTGCGCGAAGTCGATACACAGATCGGCCGC CTGCTGCAGCACCTGGAAAACCAGCACCTGCTGGAAAACACCGCGGTAGTGGTGCTCGGCGACCATGGGGAA GAGTTCATGGAACGCTCGCGCTGGGGCCACAATACCGAGTTCAATCGCTACCAGACCGGCACCGTCGCCGTG CTGAGCATTCCCGGACAGGCGCCCCGTGCCGTCCGCGGCATCACCAGCCACATCGACCTGCCCGCAACGCTC CTGCCGCTGCTGGGCGTACGCAATCCGCCCCGCGACTACTCGCTGGGACAGGACCTGCTCGCAGCGGACTAC CATCGCGACTATGCGGTGAGCGCCGATACCACGCGCATCGCCTACCTGGGCGAAGGCTTCAAGGTGAGCTTC CCACTGCGTGGCGCGGACCGTCACCACGGTCCGGTGAGCGATGGCGACGACCGCCCGCTCGACGTGGAACAA CAGGAAGCCATACGCGGCCCGCTCCGTGCAGCACGCCTGGAACTGCTGCAGGATCTCGGCCGCTTCAGCGCC CTGCCGGTAAGGGAAGAGCCGTCGCCGCGGAGCCTCGCGACTTCGTTGACGCCATGA