ViewGene
Locus Name:
GeneID:
Location:

GeneID:3798
TrivialName: PA14_30740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30740
PAO1 Ortholog Locus:PA2580
Sequence Length:591
Protein Length:196
Start: 2666962
Stop: 2667552
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05968.1|AE004686_6 (AE004686) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 193/196 (98%), Positives = 194/196 (98%)
Sequence:
ATGAAAAACATTCTCCTGCTCAACGGCGGAAAGCGTTTCGCCCATTCCGACGGTCGCCTCAACCAGACCCTG
CACGAAACCGCCCTGGCCCATCTGGACCGCCGTGGCTTCGACCTGCGCCAGACCTTCATCGACGGCGGCTAT
GACATCCCGGCGGAGGTGGACAAGTTCCTCTGGGCCGACGTGGTGATCTACCAGATGCCCGGCTGGTGGATG
GGCGCCCCGTGGACGGTGAAGCGCTACATCGACGAAGTCTTCACGGCCGGTCATGGCAGCCTCTATGCCAAC
GACGGCCGTACCCGCTCCGACAGCACGCAGAAATATGGCAGCGGCGGTCTGGTGCAGGGCAAGCGCTACATG
ATCTCGGCGACCTGGAATGCGCCGCAGCAGGCGTTCGACGATCCGAGCGACTTCTTCGAAGGGAAAGGCGTG
GATGCGGTGTATTTCCCCTTCCACAAGGCCAACCAGTTCCTCGGCATGTCCGGCCTGCCGACGTTCCTCGCG
GTGGATGTGATGAAGCGCCCGGACGTCCCGGCTGCCGTCGCTGCCTACCAGGCGCACCTGGACAGGGTGTTC
GGGCGCGCCGGCTGA
Translation:
MKNILLLNGGKRFAHSDGRLNQTLHETALAHLDRRGFDLRQTFIDGGYDIPAEVDKFLWADVVIYQMPGWWM
GAPWTVKRYIDEVFTAGHGSLYANDGRTRSDSTQKYGSGGLVQGKRYMISATWNAPQQAFDDPSDFFEGKGV
DAVYFPFHKANQFLGMSGLPTFLAVDVMKRPDVPAAVAAYQAHLDRVFGRAG*
AnnotationID:3805GeneID:3798
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:55
Gene Name:
Confidence Code:3
GeneProduct:putative NADPH specific quinone oxidoreductase
Cell Localization:()
Synonyms:mdaB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:putative modulator of drug activity B
Functional Category Confidence Code:5
COGs:COG2249,pfam02525
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70234.1|AE016663_2 (AE016791) oxidoreductase, putative [Pseudomonas putida KT2440]
          Length = 223

 Score =  370 bits (949), Expect = e-102
 Identities = 170/195 (87%), Positives = 185/195 (94%)

>gb|AAN82212.1|AE016766_300 (AE016766) Modulator of drug activity B [Escherichia coli CFT073]
          Length = 193

 Score =  270 bits (691), Expect = 3e-72
 Identities = 125/193 (64%), Positives = 147/193 (76%)

>gb|AAP18359.1| (AE016988) modulator of drug activity B [Shigella flexneri 2a str.
           2457T]
          Length = 193

 Score =  263 bits (673), Expect = 3e-70
 Identities = 122/193 (63%), Positives = 145/193 (75%)






 
Structural Features:
COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B)
CD-Length = 189 residues, 100.0% aligned
Score =  160 bits (405), Expect = 1e-40
Identities = 75/202 (37%), Positives = 101/202 (50%), Gaps = 23/202 (11%)

pfam02525, Flavodoxin_2, Flavodoxin-like fold.
CD-Length = 196 residues, 100.0% aligned
Score =  156 bits (396), Expect = 2e-39
Identities = 68/209 (32%), Positives = 89/209 (42%), Gaps = 30/209 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7599




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24741




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33148




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3798_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3798
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6019
                           PA2580_tr
                           translation of PA2580
                           196
                           98.46
                           98.97
                           0
                           1045.0
     

     
     
167817
                           gb|AAG05968.1|AE004686_6
                           (AE004686) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           196
                           98.46
                           98.97
                           0
                           1045.0
     

     
     
167818
                           gb|AAN70234.1|AE016663_2
                           (AE016791) oxidoreductase, putative [Pseudomonas putida KT2440]
                           223
                           76.23
                           82.95
                           27
                           947.0
     

     
     
167824
                           dbj|BAB37333.1|
                           (AP002564) modulator of drug activity B [Escherichia coli O157:H7]
                           196
                           63.77
                           75.00
                           3
                           691.0
     

     
     
167823
                           gb|AAA69196.1|
                           (U28377) ORF_o193 [Escherichia coli]
                           196
                           63.77
                           75.00
                           3
                           691.0
     

     






      

          
GC ORFID: 46800How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2580Glimmer Score: 

          
Start: 2286964Stop: 2286374

          
Length: 591


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2580 translation of PA2580Homolog Bit Score 407.0

          
Other Homologs:  t_PA2580 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAACATTCTCCTGCTCAACGGCGGAAAGCGTTTCGCCCATTCCGACGGTCGCCTCAACCAGACCCTG 
CACGAAACCGCCCTGGCCCATCTGGACCGCCGTGGCTTCGACCTGCGCCAGACCTTCATCGACGGCGGCTAT 
GACATCCCGGCGGAGGTGGACAAGTTCCTCTGGGCCGACGTGGTGATCTACCAGATGCCCGGCTGGTGGATG 
GGCGCCCCGTGGACGGTGAAGCGCTACATCGACGAAGTCTTCACGGCCGGTCATGGCAGCCTCTATGCCAAC 
GACGGCCGTACCCGCTCCGACAGCACGCAGAAATATGGCAGCGGCGGTCTGGTGCAGGGCAAGCGCTACATG 
ATCTCGGCGACCTGGAATGCGCCGCAGCAGGCGTTCGACGATCCGAGCGACTTCTTCGAAGGGAAAGGCGTG 
GATGCGGTGTATTTCCCCTTCCACAAGGCCAACCAGTTCCTCGGCATGTCCGGCCTGCCGACGTTCCTCGCG 
GTGGATGTGATGAAGCGCCCGGACGTCCCGGCTGCCGTCGCTGCCTACCAGGCGCACCTGGACAGGGTGTTC 
GGGCGCGCCGGCTGA