ViewGene

Locus Name:
GeneID:
Location:

GeneID:3797
TrivialName: PA14_32350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32350
PAO1 Ortholog Locus:PA2498
Sequence Length:633
Protein Length:210
Start: 2811000
Stop: 2810368
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05886.1|AE004677_3 (AE004677) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 210/210 (100%), Positives = 210/210 (100%)
Sequence:
ATGCTGGTCTGCGCAGCATTCAGCGGAGGCGCCGGCGCGAGCGACGCCGGAGCATTGCTCGAAGCCGCGCGT
CGCGGCGATACCGCGCAGGTCGCCAGCCTGCTCGAACGCAAGGTCGAGGTCGACGCGCCCAGCGCCGACGGT
AGCACCCCGCTGCTGCTGGCCACCGCCAACGACCACCTGGCGGTGGCGCGCCAGTTGATCGAGGCCGGCGCC
GACGTCAACCGGCAGAACAGCCGGCTCGACAGCCCGTATCTGCTGGCCGGCGCCGAGGGCCGCCTGGAAATC
CTGCGCCTGACCCTGCTCCACGGCGCCGACCTGAAGAGTACCAACCGCTATGGCGGCACCGCGCTGATCCCG
GCCTGCGAACGCGGCCATGTGGAAGTGGTGAAGACGCTGCTGCAAGCCGGGGTCGATCCCAACCATGTCAAC
AAGCTCGGCTGGACCGGGCTGCTCGAGGCGATCCTGCTGAGTGACGGCGGTCCGCGCCACCAGGAGATCGTG
CGCCTGCTGATCGACGCCGGCGCCGACGTCAACCTGGCCGATGCCGACGGCGTCAGCCCGCTGGCCCACGCC
CGCCAGCGCGGCCAGGGCGGGATCGAGCGGCTGCTGCTGGCCGCCGGCGCCCAATGA
Translation:
MLVCAAFSGGAGASDAGALLEAARRGDTAQVASLLERKVEVDAPSADGSTPLLLATANDHLAVARQLIEAGA
DVNRQNSRLDSPYLLAGAEGRLEILRLTLLHGADLKSTNRYGGTALIPACERGHVEVVKTLLQAGVDPNHVN
KLGWTGLLEAILLSDGGPRHQEIVRLLIDAGADVNLADADGVSPLAHARQRGQGGIERLLLAAGAQ*
AnnotationID:3804GeneID:3797
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 16:04:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2498
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00204
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAP11574.1| (AE017013) Ankyrin [Bacillus cereus ATCC 14579]
          Length = 196

 Score =  189 bits (479), Expect = 1e-47
 Identities = 97/189 (51%), Positives = 134/189 (70%), Gaps = 1/189 (0%)

Structural Features:
cd00204, ANK, ankyrin repeats
CD-Length = 126 residues, 100.0% aligned
Score = 91.3 bits (226), Expect = 7e-20
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Genomic Context:
Comment:
ReferenceID:7597
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24739
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33034
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3797_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3797

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6018 PA2498_tr translation of PA2498 210 99.99 99.99 0 1047.0
167801 gb|AAG05886.1|AE004677_3 (AE004677) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 210 99.99 99.99 0 1047.0
167804 emb|CAE43153.1| (BX640419) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 225 62.66 69.33 15 658.0
167802 emb|CAE31659.1| (BX640440) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 231 61.03 67.53 21 658.0
167803 emb|CAE40359.1| (BX640425) conserved hypothetical protein [Bordetella parapertussis] 231 61.03 67.53 21 658.0
GC ORFID: 46799How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2498Glimmer Score:
Start: 2142924Stop: 2143556
Length: 633
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2498 translation of PA2498Homolog Bit Score 407.0
Other Homologs: t_PA2498 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGGTCTGCGCAGCATTCAGCGGAGGCGCCGGCGCGAGCGACGCCGGAGCATTGCTCGAAGCCGCGCGT
CGCGGCGATACCGCGCAGGTCGCCAGCCTGCTCGAACGCAAGGTCGAGGTCGACGCGCCCAGCGCCGACGGT
AGCACCCCGCTGCTGCTGGCCACCGCCAACGACCACCTGGCGGTGGCGCGCCAGTTGATCGAGGCCGGCGCC
GACGTCAACCGGCAGAACAGCCGGCTCGACAGCCCGTATCTGCTGGCCGGCGCCGAGGGCCGCCTGGAAATC
CTGCGCCTGACCCTGCTCCACGGCGCCGACCTGAAGAGTACCAACCGCTATGGCGGCACCGCGCTGATCCCG
GCCTGCGAACGCGGCCATGTGGAAGTGGTGAAGACGCTGCTGCAAGCCGGGGTCGATCCCAACCATGTCAAC
AAGCTCGGCTGGACCGGGCTGCTCGAGGCGATCCTGCTGAGTGACGGCGGTCCGCGCCACCAGGAGATCGTG
CGCCTGCTGATCGACGCCGGCGCCGACGTCAACCTGGCCGATGCCGACGGCGTCAGCCCGCTGGCCCACGCC
CGCCAGCGCGGCCAGGGCGGGATCGAGCGGCTGCTGCTGGCCGCCGGCGCCCAATGA