ViewGene
Locus Name:
GeneID:
Location:

GeneID:3795
TrivialName: PA14_44080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44080
PAO1 Ortholog Locus:PA1579
Sequence Length:609
Protein Length:202
Start: 3925123
Stop: 3924515
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04968.1|AE004586_6 (AE004586) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 201/202 (99%), Positives = 201/202 (99%)
Sequence:
ATGCGTGGCATTTTGCGTATGACCGTGCTGGCTGCCGCAGTGTTCGGGGTGGCCGGCAATGCGCTGGCCGAA
GACTGGAAGCTGGCCAAGGACGAGGATGGCGTGAAGGTCTAcCtcaGcAGTGTCCAGGGCTCCAAGTACAAG
GCTTATcgcgGCGTTAccgaCATCAAGGCCGACGTGGCGACCATCGAGGCGCTGCAGGAGGACGTCAAGGGT
TCCTGCAAGTGGATCCATGCCTGCGCCGAGATGAAACTCCTGAAGCAGGAAGGCGCCGACGCCTGGACTTAC
TCGAAGATCGACATGCCCTGGCCGGTCACCGGTCGCGACGTGGTCATCCATGTCACCACCGAGAAGACCGCG
GATGGCACCGTGACCCGTCACCTGAAGGCCGATCCGACCTATATCCCCGAGGAAAAGGGCCAGATCCGCGTG
CCCAAGCTGGTCGGCGAGTGGAAGTTGCAGCCGAAGGGGCAGGGCGTGACGGAAGTGACCTACCAGGTGGAA
ACCGAGCCGGGTGGCAGCATTCCTTCCTGGTTGGCCAACAGCTTCGTGGTCGACGCGCCGCTGAACACCCTC
AAGGGCCTGCGTAGCGCCGCCGAGAAGCGCTGA
Translation:
MRGILRMTVLAAAVFGVAGNALAEDWKLAKDEDGVKVYLSSVQGSKYKAYRGVTDIKADVATIEALQEDVKG
SCKWIHACAEMKLLKQEGADAWTYSKIDMPWPVTGRDVVIHVTTEKTADGTVTRHLKADPTYIPEEKGQIRV
PKLVGEWKLQPKGQGVTEVTYQVETEPGGSIPSWLANSFVVDAPLNTLKGLRSAAEKR*
AnnotationID:3802GeneID:3795
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 13:01:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1579
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00177
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
cd00177, START, START (STeroidogenic Acute Regulatory (STAR) 
related lipid Transfer) Domain.
CD-Length = 212 residues,  88.2% aligned
Score = 91.2 bits (226), Expect = 8e-20
Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 8/187 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7593




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24735




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37230




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3795_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3795
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6016
                           PA1579_tr
                           translation of PA1579
                           202
                           99.50
                           99.50
                           0
                           1046.0
     

     
     
167794
                           gb|AAG04968.1|AE004586_6
                           (AE004586) hypothetical protein PA1579 [Pseudomonas aeruginosa PAO1]
                           202
                           99.50
                           99.50
                           0
                           1046.0
     

     
     
167795
                           gb|AAO55709.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           202
                           55.94
                           69.80
                           1
                           605.0
     

     
     
167796
                           gb|AAN69132.1|AE016546_13
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           203
                           44.82
                           65.51
                           5
                           510.0
     

     
     
167797
                           gb|AAM35426.1|
                           (AE011680) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           207
                           40.09
                           56.52
                           8
                           404.0
     

     






      

          
GC ORFID: 46797How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1579Glimmer Score: 

          
Start: 1028786Stop: 1029394

          
Length: 609


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1579 translation of PA1579Homolog Bit Score 407.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene988 (ORF: BLASTX 231.0), t_PA1579 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGGCATTTTGCGTATGACCGTGCTGGCTGCCGCAGTGTTCGGGGTGGCCGGCAATGCGCTGGCCGAA 
GACTGGAAGCTGGCCAAGGACGAGGATGGCGTGAAGGTCTAcCtcaGcAGTGTCCAGGGCTCCAAGTACAAG 
GCTTATcgcgGCGTTAccgaCATCAAGGCCGACGTGGCGACCATCGAGGCGCTGCAGGAGGACGTCAAGGGT 
TCCTGCAAGTGGATCCATGCCTGCGCCGAGATGAAACTCCTGAAGCAGGAAGGCGCCGACGCCTGGACTTAC 
TCGAAGATCGACATGCCCTGGCCGGTCACCGGTCGCGACGTGGTCATCCATGTCACCACCGAGAAGACCGCG 
GATGGCACCGTGACCCGTCACCTGAAGGCCGATCCGACCTATATCCCCGAGGAAAAGGGCCAGATCCGCGTG 
CCCAAGCTGGTCGGCGAGTGGAAGTTGCAGCCGAAGGGGCAGGGCGTGACGGAAGTGACCTACCAGGTGGAA 
ACCGAGCCGGGTGGCAGCATTCCTTCCTGGTTGGCCAACAGCTTCGTGGTCGACGCGCCGCTGAACACCCTC 
AAGGGCCTGCGTAGCGCCGCCGAGAAGCGCTGA