ViewGene

Locus Name:
GeneID:
Location:

GeneID:3794
TrivialName: PA14_50920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50920
PAO1 Ortholog Locus:PA1037
Sequence Length:621
Protein Length:206
Start: 4524465
Stop: 4525085
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04426.1|AE004536_5 (AE004536) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 206/206 (100%), Positives = 206/206 (100%)
Sequence:
ATGCTGCTGACCGTGCTCTACATCATCGCCATCACCGCCGAAGCCATGACCGGCGCGCTGTCGGCCGGCCGG
CGCAGCATGGACCTGTTCGGCGTGGTGCTGATCGCCTGCGTCACCGCCCTGGGCGGCGGCTCGGTACGCGAC
ATGCTGCTGGGCCATTACCCGCTGACCTGGGTCCGTCACCCGGAATACCTGGCGCTGACCGCAGTCGCCGCG
CTGGTCACGGTGTTCATCGCGCCGCTGATGCGCCACCTGCGCTCGCTGTTCCTGGTACTCGACGCGGTCGGC
CTGGTGGCCTTCACCCTGATCGGCTGCCAGGTCAGCCTGGAAATGGGCCACAGCCTGCTGATCGCGGCGATC
AGCGGGGTGATCACCGGGGTGTTCGGCGGCATTCTCCGCGACATCCTGTGCAACGACGTACCCTTGATCTTC
CGCCGCGAACTCTATGCCAGCGTGTCCTTCGCCAGCGCCTGGTGCTACCTGATCTGCGTGGAGCTGGAACTG
CCCTCCGAGCAGGCGATGCTGATCACCCTGTTCAGCGGCTTCCTGTTCCGCCTGCTGGCCATCCGCTTCCAC
TGGGAAATGCCCAAGTTCGTCTACCAGGACGATTTCGACCACTGA
Translation:
MLLTVLYIIAITAEAMTGALSAGRRSMDLFGVVLIACVTALGGGSVRDMLLGHYPLTWVRHPEYLALTAVAA
LVTVFIAPLMRHLRSLFLVLDAVGLVAFTLIGCQVSLEMGHSLLIAAISGVITGVFGGILRDILCNDVPLIF
RRELYASVSFASAWCYLICVELELPSEQAMLITLFSGFLFRLLAIRFHWEMPKFVYQDDFDH*
AnnotationID:3801GeneID:3794
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 18:06:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1037
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2860
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2860, Predicted membrane protein [Function unknown]
        CD-Length = 209 residues,  98.6% aligned
        Score =  235 bits (600), Expect = 4e-63
Genomic Context:
Comment:
ReferenceID:7591
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24733
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3794

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6015 PA1037_tr translation of PA1037 206 99.99 99.99 0 1045.0
167754 gb|AAG04426.1|AE004536_5 (AE004536) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 206 99.99 99.99 0 1045.0
167755 gb|AAO58377.1| (AE016873) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 206 79.61 90.29 3 872.0
167756 gb|AAN70468.1|AE016688_7 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 206 78.15 88.34 3 848.0
167757 emb|CAE12582.1| (BX571859) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 206 59.70 79.61 1 674.0
GC ORFID: 46796How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1037Glimmer Score:
Start: 429443Stop: 428823
Length: 621
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1037 translation of PA1037Homolog Bit Score 407.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3422 (ORF: BLASTX 340.0), t_PA1037 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGCTGACCGTGCTCTACATCATCGCCATCACCGCCGAAGCCATGACCGGCGCGCTGTCGGCCGGCCGG
CGCAGCATGGACCTGTTCGGCGTGGTGCTGATCGCCTGCGTCACCGCCCTGGGCGGCGGCTCGGTACGCGAC
ATGCTGCTGGGCCATTACCCGCTGACCTGGGTCCGTCACCCGGAATACCTGGCGCTGACCGCAGTCGCCGCG
CTGGTCACGGTGTTCATCGCGCCGCTGATGCGCCACCTGCGCTCGCTGTTCCTGGTACTCGACGCGGTCGGC
CTGGTGGCCTTCACCCTGATCGGCTGCCAGGTCAGCCTGGAAATGGGCCACAGCCTGCTGATCGCGGCGATC
AGCGGGGTGATCACCGGGGTGTTCGGCGGCATTCTCCGCGACATCCTGTGCAACGACGTACCCTTGATCTTC
CGCCGCGAACTCTATGCCAGCGTGTCCTTCGCCAGCGCCTGGTGCTACCTGATCTGCGTGGAGCTGGAACTG
CCCTCCGAGCAGGCGATGCTGATCACCCTGTTCAGCGGCTTCCTGTTCCGCCTGCTGGCCATCCGCTTCCAC
TGGGAAATGCCCAAGTTCGTCTACCAGGACGATTTCGACCACTGA