ViewGene
Locus Name:
GeneID:
Location:

GeneID:3793
TrivialName: PA14_65950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65950
PAO1 Ortholog Locus:PA4987
Sequence Length:600
Protein Length:199
Start: 5874570
Stop: 5875169
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08372.1|AE004911_7 (AE004911) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 199/199 (100%), Positives = 199/199 (100%)
Sequence:
ATGCCCCGCCCGTCACCGCCGGACGCCACCGACACGCCGCGCAGCGAAACGCACTTCCTCGGCACCCGCATC
CGCGGCCTGCGCAAGCGCCGCGGCCTGACCCTGGCCGAGCTGGCCGCACAGAGCGAACTCACCGCCGGCTAC
ATCAGCCAACTGGAACGCAACCTGGCATATCCGTCGATTCCGGCGCTGTTCAACATCGCCCGCAGCCTCGGC
GTGACCATCCAGTGGTTCTTCGCCAGCGAGGCCGCGGTGGACCCGGCGGACGCCGGCTACGTGGTGCGGCGC
AACACGCGCATGAGCGTGCATTACGAAGACGGCATCATCGACGAACTGCTCACCCCGCAGCCCAGCCGCCAG
TTGGAGATCCTCCACTCGCGTTTCCCGCCGGGCACCTACAGCCAGCAGAGCTACAGCCATGAGGGCGAGGAA
GCCGGCTACATCCTCAGCGGAATCTTCGAACTCTGGGTCGGCGACCGCCATTTCCAGCTCCGCGAGGGCGAC
AGCTTCAGCTACTCCAGCCAGGAACCGCATCGCTACGGCAACCCGGGCGACAGCGATACCCTGGTGCTCTGG
GTGATCACCCCGCCGACGTTCTGA
Translation:
MPRPSPPDATDTPRSETHFLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSIPALFNIARSLG
VTIQWFFASEAAVDPADAGYVVRRNTRMSVHYEDGIIDELLTPQPSRQLEILHSRFPPGTYSQQSYSHEGEE
AGYILSGIFELWVGDRHFQLREGDSFSYSSQEPHRYGNPGDSDTLVLWVITPPTF*
AnnotationID:3800GeneID:3793
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 07:07:15
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4987
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00093,smart00530,pfam01381
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68476.1|AE016480_3 (AE016784) transcriptional regulator, Cro/CI family [Pseudomonas
           putida KT2440]
          Length = 199

 Score =  335 bits (860), Expect = 7e-92
 Identities = 159/199 (79%), Positives = 179/199 (89%)








 
Structural Features:
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins 
belonging to the xenobiotic response element family of transcriptional regulators.
CD-Length = 58 residues, 100.0% aligned
Score = 59.8 bits (145), Expect = 2e-10
Identities = 21/58 (36%), Positives = 35/58 (60%)

smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins 
CD-Length = 56 residues, 100.0% aligned
Score = 55.9 bits (135), Expect = 3e-09
Identities = 18/56 (32%), Positives = 34/56 (60%)

pfam01381, HTH_3, Helix-turn-helix. 
CD-Length = 55 residues, 100.0% aligned
Score = 53.6 bits (129), Expect = 2e-08
Identities = 18/55 (32%), Positives = 33/55 (60%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7589




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24731




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35047




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3793_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3793
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6014
                           PA4987_tr
                           translation of PA4987
                           199
                           99.99
                           99.99
                           0
                           1048.0
     

     
     
167752
                           gb|AAG08372.1|AE004911_7
                           (AE004911) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           199
                           99.99
                           99.99
                           0
                           1048.0
     

     
     
167753
                           gb|AAN68476.1|AE016480_3
                           (AE016784) transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440]
                           199
                           79.89
                           89.94
                           0
                           860.0
     

     






      

          
GC ORFID: 46795How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4987Glimmer Score: 

          
Start: 5138253Stop: 5138852

          
Length: 600


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4987 translation of PA4987Homolog Bit Score 408.0

          
Other Homologs:  t_PA4987 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGCCCGTCACCGCCGGACGCCACCGACACGCCGCGCAGCGAAACGCACTTCCTCGGCACCCGCATC 
CGCGGCCTGCGCAAGCGCCGCGGCCTGACCCTGGCCGAGCTGGCCGCACAGAGCGAACTCACCGCCGGCTAC 
ATCAGCCAACTGGAACGCAACCTGGCATATCCGTCGATTCCGGCGCTGTTCAACATCGCCCGCAGCCTCGGC 
GTGACCATCCAGTGGTTCTTCGCCAGCGAGGCCGCGGTGGACCCGGCGGACGCCGGCTACGTGGTGCGGCGC 
AACACGCGCATGAGCGTGCATTACGAAGACGGCATCATCGACGAACTGCTCACCCCGCAGCCCAGCCGCCAG 
TTGGAGATCCTCCACTCGCGTTTCCCGCCGGGCACCTACAGCCAGCAGAGCTACAGCCATGAGGGCGAGGAA 
GCCGGCTACATCCTCAGCGGAATCTTCGAACTCTGGGTCGGCGACCGCCATTTCCAGCTCCGCGAGGGCGAC 
AGCTTCAGCTACTCCAGCCAGGAACCGCATCGCTACGGCAACCCGGGCGACAGCGATACCCTGGTGCTCTGG 
GTGATCACCCCGCCGACGTTCTGA